Variant report

Variant	rs2357555
Chromosome Location	chr8:66875839-66875840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66752643..66756162-chr8:66875413..66878176,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11779150	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66864400-66876200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:66868200-66876000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:66872600-66876600	Weak transcription	NHEK	skin
4	chr8:66872600-66877000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:66872800-66877200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:66873000-66876600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:66873000-66879800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:66873600-66877000	Weak transcription	Dnd41	blood
9	chr8:66873600-66877200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:66873600-66887400	Weak transcription	Thymus	Thymus
11	chr8:66873800-66876200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:66873800-66877000	Weak transcription	Primary T cells from cord blood	blood
13	chr8:66873800-66877000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr8:66873800-66890600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr8:66874000-66877000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:66874200-66877000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:66874200-66877000	Weak transcription	Fetal Thymus	thymus
18	chr8:66874400-66876200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:66874400-66879400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr8:66875000-66876200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr8:66875000-66876200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr8:66875600-66878800	Enhancers	Hela-S3	cervix
23	chr8:66875800-66876000	Enhancers	A549	lung
24	chr8:66875800-66876400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr8:66875800-66877200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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