Variant report

Variant	rs11779150
Chromosome Location	chr8:66877803-66877804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66877498..66879065-chr8:66939086..66941564,2	MCF-7	breast:
2	chr8:66752643..66756162-chr8:66875413..66878176,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2357555	1.00[CEU][hapmap]
rs6472244	1.00[CEU][hapmap]
rs6986947	1.00[CEU][hapmap]
rs6992031	1.00[CEU][hapmap]
rs6998258	1.00[CEU][hapmap]
rs7005882	1.00[CEU][hapmap]
rs7006209	1.00[CEU][hapmap]
rs7839635	1.00[CEU][hapmap]
rs7843436	1.00[CEU][hapmap]
rs884325	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66873000-66879800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:66873600-66887400	Weak transcription	Thymus	Thymus
3	chr8:66873800-66890600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:66874400-66879400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:66875600-66878800	Enhancers	Hela-S3	cervix
6	chr8:66876200-66878000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:66876600-66878200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:66876600-66878400	Enhancers	NHEK	skin
9	chr8:66876800-66878800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr8:66877000-66878200	Enhancers	Placenta	Placenta
11	chr8:66877000-66878600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr8:66877000-66878800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr8:66877000-66879000	Enhancers	Primary T cells from cord blood	blood
14	chr8:66877000-66879000	Enhancers	Fetal Thymus	thymus
15	chr8:66877200-66878600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr8:66877600-66878400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:66877600-66879600	Weak transcription	A549	lung
18	chr8:66877800-66878600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:66877800-66879400	Weak transcription	HMEC	breast
20	chr8:66877800-66881800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr8:66877800-66886200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr8:66877800-66886400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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