Variant report

Variant	rs7843436
Chromosome Location	chr8:66976471-66976472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66975090..66978056-chr8:67341293..67343047,2	MCF-7	breast:
2	chr8:66971479..66974707-chr8:66974890..66977947,4	K562	blood:
3	chr8:66974900..66977338-chr8:67024571..67027065,2	MCF-7	breast:
4	chr8:66967974..66973284-chr8:66974182..66976883,4	K562	blood:

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10096789	0.95[EUR][1000 genomes]
rs10098823	1.00[CEU][hapmap]
rs11779150	1.00[CEU][hapmap]
rs12156080	1.00[CEU][hapmap]
rs13439818	0.90[EUR][1000 genomes]
rs34083382	0.92[EUR][1000 genomes]
rs55640054	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55691225	0.95[EUR][1000 genomes]
rs55745275	0.95[EUR][1000 genomes]
rs56163324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56176008	0.97[EUR][1000 genomes]
rs57390453	1.00[EUR][1000 genomes]
rs61738600	1.00[EUR][1000 genomes]
rs6472244	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6982394	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6983227	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6986947	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6990486	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6992031	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992434	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6998258	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7005882	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7006209	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7006394	0.83[AFR][1000 genomes]
rs7010547	1.00[EUR][1000 genomes]
rs73236728	0.90[EUR][1000 genomes]
rs749328	0.95[EUR][1000 genomes]
rs7813194	0.95[EUR][1000 genomes]
rs7813201	0.95[EUR][1000 genomes]
rs7838582	1.00[EUR][1000 genomes]
rs7839635	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7845017	1.00[EUR][1000 genomes]
rs884325	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs959302	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66971200-66976600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:66973600-66977600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:66974400-66977600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:66975000-66977600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr8:66975200-66977800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:66975600-66977600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:66975600-66977800	Enhancers	NHDF-Ad	bronchial
8	chr8:66975800-66977200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:66975800-66977200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:66975800-66977600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:66975800-66977600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:66975800-66977600	Enhancers	Osteobl	bone
13	chr8:66975800-66977800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:66975800-66977800	Enhancers	Dnd41	blood
15	chr8:66975800-66977800	Enhancers	HMEC	breast
16	chr8:66975800-66977800	Enhancers	NHLF	lung
17	chr8:66976000-66977800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:66976200-66976800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:66976200-66977200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr8:66976200-66977200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:66976200-66977200	Enhancers	Adipose Nuclei	Adipose
22	chr8:66976200-66977600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr8:66976200-66977600	Enhancers	Brain Cingulate Gyrus	brain
24	chr8:66976200-66977600	Enhancers	Brain Hippocampus Middle	brain
25	chr8:66976200-66977600	Enhancers	NHEK	skin
26	chr8:66976200-66977800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr8:66976200-66977800	Enhancers	Colon Smooth Muscle	Colon
28	chr8:66976200-66977800	Enhancers	A549	lung
29	chr8:66976200-66978000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:66976200-66978000	Enhancers	HSMM	muscle
31	chr8:66976200-66978000	Enhancers	HSMMtube	muscle
32	chr8:66976400-66976800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:66976400-66976800	Enhancers	Small Intestine	intestine
34	chr8:66976400-66976800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr8:66976400-66977000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr8:66976400-66977000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:66976400-66977200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:66976400-66977200	Enhancers	Fetal Lung	lung
39	chr8:66976400-66977200	Enhancers	Rectal Smooth Muscle	rectum
40	chr8:66976400-66977600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr8:66976400-66977600	Enhancers	Brain Substantia Nigra	brain
42	chr8:66976400-66978000	Enhancers	Fetal Muscle Leg	muscle

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