Variant report

Variant	rs7006394
Chromosome Location	chr8:66992957-66992958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66990550..66992462-chr8:66992948..66995417,2	MCF-7	breast:
2	chr8:66992684..66994494-chr8:66996931..66998621,2	K562	blood:
3	chr8:66991083..66994704-chr8:67025048..67026933,3	MCF-7	breast:
4	chr8:66990892..66992963-chr8:66994484..66996081,2	K562	blood:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10092687	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10095931	1.00[CHB][hapmap]
rs10100725	0.87[CEU][hapmap]
rs10101457	1.00[CHB][hapmap]
rs10113208	1.00[CHB][hapmap]
rs12334408	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs13252592	0.87[CEU][hapmap]
rs13279522	1.00[CEU][hapmap]
rs16932426	1.00[CHB][hapmap]
rs16932461	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16932465	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16932468	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16932544	1.00[CHB][hapmap]
rs17306183	1.00[CHB][hapmap]
rs17307227	1.00[CHB][hapmap]
rs2357570	1.00[CHB][hapmap]
rs2357571	1.00[CHB][hapmap]
rs28364018	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs28396616	0.87[ASN][1000 genomes]
rs28491110	1.00[ASN][1000 genomes]
rs4366069	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4380923	1.00[CHB][hapmap]
rs4398895	1.00[ASN][1000 genomes]
rs4495409	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs4495411	1.00[CHB][hapmap]
rs4565445	1.00[CHB][hapmap]
rs55640054	0.81[AFR][1000 genomes]
rs56163324	0.83[AFR][1000 genomes]
rs56411320	0.87[ASN][1000 genomes]
rs58195552	1.00[ASN][1000 genomes]
rs59792335	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61437839	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472244	0.80[ASW][hapmap];0.83[GIH][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs6472245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472246	0.87[CEU][hapmap]
rs6472251	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs6982394	0.83[GIH][hapmap]
rs6983227	0.82[AFR][1000 genomes]
rs6985796	1.00[CHB][hapmap]
rs6986947	0.83[GIH][hapmap]
rs6988195	1.00[CHB][hapmap]
rs6990045	0.87[CEU][hapmap]
rs6990486	0.83[GIH][hapmap]
rs6992031	0.83[AFR][1000 genomes]
rs6998258	0.83[GIH][hapmap]
rs7006209	0.90[ASW][hapmap];0.83[GIH][hapmap];0.83[LWK][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs7006334	1.00[CHB][hapmap]
rs7006611	0.82[CEU][hapmap]
rs7008359	1.00[CHB][hapmap]
rs7008578	1.00[CHB][hapmap]
rs73691276	1.00[ASN][1000 genomes]
rs7814933	1.00[CHB][hapmap]
rs7818219	1.00[CHB][hapmap]
rs7834423	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs7835948	1.00[CHB][hapmap]
rs7836993	1.00[CHB][hapmap]
rs7843436	0.83[AFR][1000 genomes]
rs7845334	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66989200-66993800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:66991600-66993000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:66991600-66993000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr8:66992800-66993000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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