Variant report

Variant	rs4398895
Chromosome Location	chr8:66979044-66979045
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16932461	0.87[ASN][1000 genomes]
rs16932465	1.00[ASN][1000 genomes]
rs16932468	0.87[ASN][1000 genomes]
rs28396616	0.87[ASN][1000 genomes]
rs28491110	1.00[ASN][1000 genomes]
rs56411320	0.87[ASN][1000 genomes]
rs58195552	1.00[ASN][1000 genomes]
rs59792335	0.87[ASN][1000 genomes]
rs61437839	1.00[ASN][1000 genomes]
rs6472245	1.00[ASN][1000 genomes]
rs7006394	1.00[ASN][1000 genomes]
rs73691276	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66977200-66979600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:66977600-66988200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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