Variant report

Variant	rs28396616
Chromosome Location	chr8:66985121-66985122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10096789	0.87[AFR][1000 genomes]
rs13439818	0.87[AFR][1000 genomes]
rs16932465	0.87[ASN][1000 genomes]
rs28491110	0.87[ASN][1000 genomes]
rs4398895	0.87[ASN][1000 genomes]
rs55745275	0.85[AFR][1000 genomes]
rs58195552	0.87[ASN][1000 genomes]
rs61437839	0.87[ASN][1000 genomes]
rs6472245	0.87[ASN][1000 genomes]
rs7006394	0.87[ASN][1000 genomes]
rs73691276	0.87[ASN][1000 genomes]
rs7813194	0.84[AFR][1000 genomes]
rs7813201	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66977600-66988200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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