Variant report

Variant	rs16932465
Chromosome Location	chr8:66988197-66988198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66987458..66989475-chr8:67026400..67028470,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10091688	0.83[AFR][1000 genomes]
rs10092687	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10095531	0.83[AFR][1000 genomes]
rs10095931	1.00[CHB][hapmap]
rs10096043	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs10101457	1.00[CHB][hapmap]
rs10106062	0.83[AFR][1000 genomes]
rs10108405	0.87[YRI][hapmap]
rs10110227	0.83[AFR][1000 genomes]
rs10113208	1.00[CHB][hapmap]
rs11987000	0.81[EUR][1000 genomes]
rs11993015	0.81[EUR][1000 genomes]
rs12334408	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13439700	0.87[YRI][hapmap]
rs16932426	1.00[CHB][hapmap]
rs16932461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16932468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16932544	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17306183	1.00[CHB][hapmap]
rs17307227	1.00[CHB][hapmap]
rs2357570	1.00[CHB][hapmap]
rs2357571	1.00[CHB][hapmap]
rs2357669	0.81[EUR][1000 genomes]
rs28364018	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs28396616	0.87[ASN][1000 genomes]
rs28491110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366069	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4380923	1.00[CHB][hapmap]
rs4398895	1.00[ASN][1000 genomes]
rs4495409	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4495411	1.00[CHB][hapmap]
rs4496952	0.92[EUR][1000 genomes]
rs4565445	1.00[CHB][hapmap]
rs56409403	0.92[EUR][1000 genomes]
rs56411320	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56981664	0.92[EUR][1000 genomes]
rs58195552	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59142644	0.81[EUR][1000 genomes]
rs59792335	0.87[ASN][1000 genomes]
rs61437839	1.00[ASN][1000 genomes]
rs6472245	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6472251	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6985796	1.00[CHB][hapmap]
rs6988195	1.00[CHB][hapmap]
rs7006334	1.00[CHB][hapmap]
rs7006394	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7008359	1.00[CHB][hapmap]
rs7008578	1.00[CHB][hapmap]
rs73246529	0.92[EUR][1000 genomes]
rs73246531	0.92[EUR][1000 genomes]
rs73246553	0.81[EUR][1000 genomes]
rs73691276	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691300	0.85[EUR][1000 genomes]
rs7814933	1.00[CHB][hapmap]
rs7818219	1.00[CHB][hapmap]
rs7834423	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7835948	1.00[CHB][hapmap]
rs7836993	1.00[CHB][hapmap]
rs7845334	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66977600-66988200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:66988000-66989000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr8:66988000-66989400	Enhancers	HUES64 Cell Line	embryonic stem cell

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