Variant report

Variant	rs28364018
Chromosome Location	chr8:67089870-67089871
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67024833..67027621-chr8:67087272..67089890,2	MCF-7	breast:
2	chr8:66976852..66977966-chr8:67088847..67090142,11	MCF-7	breast:
3	chr8:67088502..67091443-chr8:67341463..67343865,2	MCF-7	breast:
4	chr8:67088832..67090094-chr8:67333566..67334549,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10092687	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10095931	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10101457	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10113208	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11986805	1.00[ASN][1000 genomes]
rs11988053	1.00[ASN][1000 genomes]
rs11993015	1.00[ASN][1000 genomes]
rs12334408	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16932426	1.00[CHB][hapmap]
rs16932461	1.00[CHB][hapmap]
rs16932465	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs16932468	1.00[CHB][hapmap]
rs16932514	1.00[ASN][1000 genomes]
rs16932544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17306183	1.00[CHB][hapmap]
rs17307227	1.00[CHB][hapmap]
rs2357570	1.00[CHB][hapmap]
rs2357571	1.00[CHB][hapmap]
rs2357669	1.00[ASN][1000 genomes]
rs4366069	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs4380923	1.00[CHB][hapmap]
rs4495409	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs4495411	1.00[CHB][hapmap]
rs4496952	1.00[ASN][1000 genomes]
rs4565445	1.00[CHB][hapmap]
rs56409403	1.00[ASN][1000 genomes]
rs56981664	1.00[ASN][1000 genomes]
rs59142644	1.00[ASN][1000 genomes]
rs6472245	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6472249	1.00[ASN][1000 genomes]
rs6472251	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6985796	1.00[CHB][hapmap]
rs6988195	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7006334	1.00[CHB][hapmap]
rs7006394	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7008359	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7008578	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73246516	1.00[ASN][1000 genomes]
rs73246529	1.00[ASN][1000 genomes]
rs73246531	1.00[ASN][1000 genomes]
rs73246553	1.00[ASN][1000 genomes]
rs73691300	1.00[ASN][1000 genomes]
rs7814933	1.00[CHB][hapmap]
rs7818219	1.00[CHB][hapmap]
rs7834423	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs7835948	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7836993	1.00[CHB][hapmap]
rs7845334	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67088600-67090000	Enhancers	Fetal Intestine Small	intestine
2	chr8:67088800-67090000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:67088800-67090000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:67088800-67090200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
5	chr8:67088800-67090400	Bivalent Enhancer	Fetal Thymus	thymus
6	chr8:67088800-67090600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
7	chr8:67089000-67090000	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr8:67089000-67090000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr8:67089000-67090000	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr8:67089000-67090000	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr8:67089000-67090000	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr8:67089000-67090000	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr8:67089000-67090000	Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr8:67089000-67090000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr8:67089000-67090000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr8:67089000-67090000	Active TSS	NHDF-Ad	bronchial
17	chr8:67089000-67090200	Active TSS	H9 Cell Line	embryonic stem cell
18	chr8:67089000-67090200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:67089000-67090200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:67089000-67090200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr8:67089000-67090200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr8:67089000-67090200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:67089000-67090200	Active TSS	A549	lung
24	chr8:67089200-67090000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:67089200-67090000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:67089200-67090000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:67089200-67090000	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr8:67089200-67090000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr8:67089200-67090000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:67089200-67090000	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
31	chr8:67089200-67090000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
32	chr8:67089200-67090000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:67089200-67090000	Active TSS	Brain Anterior Caudate	brain
34	chr8:67089200-67090000	Flanking Active TSS	Gastric	stomach
35	chr8:67089200-67090000	Flanking Active TSS	Right Ventricle	heart
36	chr8:67089200-67090000	Active TSS	HepG2	liver
37	chr8:67089200-67090200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:67089200-67090200	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr8:67089200-67090200	Active TSS	HSMMtube	muscle
40	chr8:67089200-67090200	Active TSS	NHLF	lung
41	chr8:67089400-67090000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr8:67089400-67090000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
43	chr8:67089400-67090000	Flanking Active TSS	Fetal Muscle Trunk	muscle
44	chr8:67089400-67090000	Flanking Active TSS	Pancreas	Pancrea
45	chr8:67089400-67090000	Active TSS	HSMM	muscle
46	chr8:67089400-67090200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
47	chr8:67089400-67090200	Flanking Active TSS	Placenta	Placenta
48	chr8:67089400-67090200	Active TSS	Hela-S3	cervix
49	chr8:67089600-67090000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:67089600-67090000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell

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