Variant report

Variant	rs56409403
Chromosome Location	chr8:67016213-67016214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67015269..67017296-chr8:67024830..67026727,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10092687	1.00[ASN][1000 genomes]
rs10095931	1.00[ASN][1000 genomes]
rs10101457	1.00[ASN][1000 genomes]
rs10113208	1.00[ASN][1000 genomes]
rs11986805	1.00[ASN][1000 genomes]
rs11987000	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11988053	1.00[ASN][1000 genomes]
rs11993015	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334408	1.00[ASN][1000 genomes]
rs16932461	0.92[EUR][1000 genomes]
rs16932465	0.92[EUR][1000 genomes]
rs16932468	0.92[EUR][1000 genomes]
rs16932514	1.00[ASN][1000 genomes]
rs16932544	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2357669	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28364018	1.00[ASN][1000 genomes]
rs28491110	0.92[EUR][1000 genomes]
rs4366069	1.00[ASN][1000 genomes]
rs4495409	1.00[ASN][1000 genomes]
rs4496952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56411320	1.00[EUR][1000 genomes]
rs56981664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58195552	1.00[EUR][1000 genomes]
rs59142644	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472249	1.00[ASN][1000 genomes]
rs6472251	1.00[ASN][1000 genomes]
rs6988195	1.00[ASN][1000 genomes]
rs7008359	1.00[ASN][1000 genomes]
rs7008578	1.00[ASN][1000 genomes]
rs73246516	1.00[ASN][1000 genomes]
rs73246529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246553	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73691276	1.00[EUR][1000 genomes]
rs73691300	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834423	1.00[ASN][1000 genomes]
rs7835948	1.00[ASN][1000 genomes]
rs7845334	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67013000-67016600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:67014400-67017400	Weak transcription	K562	blood
3	chr8:67015200-67016400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr8:67015600-67016400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:67015800-67016400	Bivalent Enhancer	Primary B cells from cord blood	blood
6	chr8:67015800-67017000	Enhancers	Primary neutrophils fromperipheralblood	blood

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