Variant report

Variant	rs7835948
Chromosome Location	chr8:67044043-67044044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67026208..67027713-chr8:67043472..67045571,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10092687	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[LWK][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093091	0.86[YRI][hapmap]
rs10095931	0.84[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101457	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104916	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs10113208	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986216	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11986805	0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988053	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993015	1.00[ASN][1000 genomes]
rs11997416	0.86[YRI][hapmap]
rs12334408	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932426	1.00[CHB][hapmap]
rs16932461	1.00[CHB][hapmap]
rs16932465	1.00[CHB][hapmap]
rs16932468	1.00[CHB][hapmap]
rs16932514	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932544	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17306183	1.00[CHB][hapmap]
rs17307227	1.00[CHB][hapmap]
rs2357570	1.00[CHB][hapmap]
rs2357571	1.00[CHB][hapmap]
rs2357669	1.00[ASN][1000 genomes]
rs28364018	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs3176921	0.83[ASW][hapmap];0.86[YRI][hapmap]
rs4366069	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[LWK][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380923	1.00[CHB][hapmap]
rs4495409	0.89[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[LWK][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495411	1.00[CHB][hapmap]
rs4496952	1.00[ASN][1000 genomes]
rs4565445	1.00[CHB][hapmap]
rs5030877	0.86[YRI][hapmap]
rs56409403	1.00[ASN][1000 genomes]
rs56981664	1.00[ASN][1000 genomes]
rs59142644	1.00[ASN][1000 genomes]
rs6472245	1.00[CHB][hapmap]
rs6472249	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472251	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472254	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs6472255	0.86[YRI][hapmap]
rs6472256	0.86[YRI][hapmap]
rs6985796	1.00[CHB][hapmap]
rs6988195	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990624	0.86[YRI][hapmap]
rs6996265	0.86[YRI][hapmap]
rs6998761	0.88[ASW][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs7006334	1.00[CHB][hapmap]
rs7006394	1.00[CHB][hapmap]
rs7008359	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008578	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013524	0.83[ASW][hapmap];0.86[YRI][hapmap]
rs73246516	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246529	1.00[ASN][1000 genomes]
rs73246531	1.00[ASN][1000 genomes]
rs73246553	1.00[ASN][1000 genomes]
rs73691300	1.00[ASN][1000 genomes]
rs7814933	1.00[CHB][hapmap]
rs7818219	1.00[CHB][hapmap]
rs7818902	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs7822243	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs7826464	0.86[YRI][hapmap]
rs7830926	0.87[AFR][1000 genomes]
rs7834423	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[LWK][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836993	1.00[CHB][hapmap]
rs7838500	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs7842707	0.83[ASW][hapmap];0.86[YRI][hapmap]
rs7842761	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs7843077	0.84[CEU][hapmap]
rs7843605	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs7845334	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9694082	0.88[ASW][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67036800-67044800	Weak transcription	Pancreas	Pancrea
2	chr8:67036800-67044800	Weak transcription	Spleen	Spleen
3	chr8:67036800-67046400	Enhancers	NHLF	lung
4	chr8:67036800-67047000	Enhancers	NHDF-Ad	bronchial
5	chr8:67036800-67047200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:67039000-67048800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:67040200-67045400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:67040200-67050000	Enhancers	Adipose Nuclei	Adipose
9	chr8:67040400-67046400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr8:67040800-67044800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:67041000-67046200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:67041400-67045200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:67041600-67044800	Weak transcription	Psoas Muscle	Psoas
14	chr8:67042400-67047200	Enhancers	Fetal Muscle Leg	muscle
15	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:67042800-67044400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:67042800-67044600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:67042800-67044600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:67042800-67044800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:67042800-67044800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr8:67042800-67044800	Weak transcription	NH-A	brain
22	chr8:67042800-67046000	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr8:67043000-67044400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:67043000-67044600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:67043000-67044600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:67043000-67044600	Weak transcription	HMEC	breast
27	chr8:67043000-67044600	Weak transcription	NHEK	skin
28	chr8:67043200-67044400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:67043400-67044800	Weak transcription	Placenta	Placenta
30	chr8:67043400-67047400	Genic enhancers	HSMM	muscle
31	chr8:67043600-67044200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:67043600-67044600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:67043600-67044600	Enhancers	HSMMtube	muscle
34	chr8:67043600-67044600	Weak transcription	Osteobl	bone
35	chr8:67043600-67045800	Genic enhancers	Fetal Heart	heart
36	chr8:67043600-67046400	Genic enhancers	Muscle Satellite Cultured Cells	--
37	chr8:67043800-67046200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr8:67044000-67044600	Weak transcription	Left Ventricle	heart
39	chr8:67044000-67044800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr8:67044000-67044800	Weak transcription	A549	lung
41	chr8:67044000-67045600	Enhancers	Right Ventricle	heart
42	chr8:67044000-67049200	Weak transcription	Right Atrium	heart
43	chr8:67044000-67057800	Weak transcription	Liver	Liver

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