Variant report

Variant	rs17306183
Chromosome Location	chr8:66904375-66904376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66903199..66905327-chr8:66932358..66934604,2	MCF-7	breast:
2	chr8:66903801..66905636-chr8:66921446..66924226,2	MCF-7	breast:
3	chr8:66894580..66896752-chr8:66901785..66904644,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147570	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10092687	1.00[CHB][hapmap]
rs10095931	1.00[CHB][hapmap]
rs10101457	1.00[CHB][hapmap]
rs10113208	1.00[CHB][hapmap]
rs1108213	1.00[ASN][1000 genomes]
rs11984602	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11985050	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988589	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11994407	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11994927	0.88[CEU][hapmap]
rs12334408	1.00[CHB][hapmap]
rs16932426	1.00[CHB][hapmap]
rs16932461	1.00[CHB][hapmap]
rs16932465	1.00[CHB][hapmap]
rs16932468	1.00[CHB][hapmap]
rs16932544	1.00[CHB][hapmap]
rs17307227	1.00[CHB][hapmap]
rs2357567	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2357570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2357571	1.00[CHB][hapmap]
rs28364018	1.00[CHB][hapmap]
rs34464051	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35753080	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4366069	1.00[CHB][hapmap]
rs4380923	1.00[CHB][hapmap]
rs4487748	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4495409	1.00[CHB][hapmap]
rs4495411	1.00[CHB][hapmap]
rs4565445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57683289	0.84[EUR][1000 genomes]
rs58489131	1.00[ASN][1000 genomes]
rs58817197	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62506636	1.00[ASN][1000 genomes]
rs62506637	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62506650	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62507386	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6472245	1.00[CHB][hapmap]
rs6472251	1.00[CHB][hapmap]
rs6985796	1.00[CHB][hapmap]
rs6988195	1.00[CHB][hapmap]
rs7001192	1.00[YRI][hapmap]
rs7001442	1.00[YRI][hapmap]
rs7006334	1.00[CHB][hapmap]
rs7006394	1.00[CHB][hapmap]
rs7008359	1.00[CHB][hapmap]
rs7008578	1.00[CHB][hapmap]
rs7011264	1.00[ASN][1000 genomes]
rs7017127	1.00[ASN][1000 genomes]
rs7812439	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7814933	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7818219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7834423	1.00[CHB][hapmap]
rs7835948	1.00[CHB][hapmap]
rs7836993	1.00[CHB][hapmap]
rs7845334	1.00[CHB][hapmap]
rs950729	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66894800-66904400	Weak transcription	Thymus	Thymus
2	chr8:66895000-66904400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr8:66900600-66904600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:66900800-66904400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:66903400-66904800	Enhancers	Fetal Intestine Large	intestine
6	chr8:66903400-66905000	Enhancers	Fetal Intestine Small	intestine
7	chr8:66903400-66905000	Enhancers	Placenta	Placenta
8	chr8:66904000-66905000	Enhancers	Primary T cells from cord blood	blood

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