Variant report

Variant	rs4487748
Chromosome Location	chr8:66910028-66910029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66753202..66755807-chr8:66909407..66912061,2	K562	blood:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1108213	0.94[ASN][1000 genomes]
rs11984602	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11985050	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11985589	0.85[EUR][1000 genomes]
rs11988589	0.89[EUR][1000 genomes]
rs11993927	0.85[EUR][1000 genomes]
rs11994407	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11994927	0.85[EUR][1000 genomes]
rs17306183	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2357567	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2357570	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34464051	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35753080	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4565445	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57683289	0.89[EUR][1000 genomes]
rs58489131	0.94[ASN][1000 genomes]
rs58817197	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62506636	0.94[ASN][1000 genomes]
rs62506637	0.94[ASN][1000 genomes]
rs62506650	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62507386	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7011264	0.94[ASN][1000 genomes]
rs7017127	0.94[ASN][1000 genomes]
rs7812439	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7814933	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7818219	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs950729	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66905000-66910200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:66905000-66910200	Weak transcription	Thymus	Thymus
3	chr8:66909800-66915400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr8:66909800-66915400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:66910000-66911000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:66910000-66912000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr8:66910000-66912200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr8:66910000-66914000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr8:66910000-66915800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr8:66910000-66916200	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links