Variant report

Variant	rs58489131
Chromosome Location	chr8:66901416-66901417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66837771..66840064-chr8:66901193..66903433,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1108213	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1108214	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11984602	0.97[ASN][1000 genomes]
rs11985050	1.00[ASN][1000 genomes]
rs11987611	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11988417	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11994407	0.97[ASN][1000 genomes]
rs11996481	0.86[AMR][1000 genomes]
rs11998621	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17306183	1.00[ASN][1000 genomes]
rs2002333	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2002334	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2357567	0.97[ASN][1000 genomes]
rs2357570	0.97[ASN][1000 genomes]
rs34464051	1.00[ASN][1000 genomes]
rs35753080	0.94[ASN][1000 genomes]
rs4487748	0.94[ASN][1000 genomes]
rs4565445	0.97[ASN][1000 genomes]
rs56246853	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56747456	0.82[AMR][1000 genomes]
rs57690026	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58817197	0.97[ASN][1000 genomes]
rs62506596	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62506636	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62506637	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62506650	0.97[ASN][1000 genomes]
rs62507386	0.97[ASN][1000 genomes]
rs6981019	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6992232	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6997506	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7001181	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7011264	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017127	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812439	0.97[ASN][1000 genomes]
rs7814933	0.97[ASN][1000 genomes]
rs7818219	0.97[ASN][1000 genomes]
rs7841695	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs950729	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66893800-66901800	Weak transcription	Spleen	Spleen
2	chr8:66894800-66904000	Weak transcription	Primary T cells from cord blood	blood
3	chr8:66894800-66904400	Weak transcription	Thymus	Thymus
4	chr8:66895000-66904400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr8:66900600-66901800	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:66900600-66904600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:66900800-66904400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:66901400-66902000	Enhancers	GM12878-XiMat	blood

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