Variant report

Variant	rs10113208
Chromosome Location	chr8:67046715-67046716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67046137..67048325-chr8:67052622..67055145,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10092687	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095931	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099957	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs10101457	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109602	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs10113415	0.83[CEU][hapmap]
rs11986805	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988053	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993015	1.00[ASN][1000 genomes]
rs11997605	0.83[CEU][hapmap]
rs12334408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264487	0.82[CEU][hapmap]
rs13266516	0.83[CEU][hapmap]
rs16932426	1.00[CHB][hapmap]
rs16932461	1.00[CHB][hapmap]
rs16932465	1.00[CHB][hapmap]
rs16932468	1.00[CHB][hapmap]
rs16932514	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932527	0.83[AFR][1000 genomes]
rs16932535	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs16932544	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17306183	1.00[CHB][hapmap]
rs17307227	1.00[CHB][hapmap]
rs2357570	1.00[CHB][hapmap]
rs2357571	1.00[CHB][hapmap]
rs2357669	1.00[ASN][1000 genomes]
rs28364018	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4262310	0.83[CEU][hapmap]
rs4366069	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380923	1.00[CHB][hapmap]
rs4495409	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4495411	1.00[CHB][hapmap]
rs4496952	1.00[ASN][1000 genomes]
rs4565445	1.00[CHB][hapmap]
rs56394731	0.87[AFR][1000 genomes]
rs56409403	1.00[ASN][1000 genomes]
rs56981664	1.00[ASN][1000 genomes]
rs59142644	1.00[ASN][1000 genomes]
rs6472245	1.00[CHB][hapmap]
rs6472248	0.83[CEU][hapmap]
rs6472249	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472251	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985796	1.00[CHB][hapmap]
rs6988195	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003017	0.93[YRI][hapmap]
rs7006334	1.00[CHB][hapmap]
rs7006394	1.00[CHB][hapmap]
rs7006903	0.96[YRI][hapmap]
rs7008244	0.94[YRI][hapmap]
rs7008359	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008578	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246516	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246529	1.00[ASN][1000 genomes]
rs73246531	1.00[ASN][1000 genomes]
rs73246553	1.00[ASN][1000 genomes]
rs73691300	1.00[ASN][1000 genomes]
rs7814933	1.00[CHB][hapmap]
rs7818219	1.00[CHB][hapmap]
rs7820617	0.89[YRI][hapmap]
rs7824630	0.83[CEU][hapmap]
rs7827531	0.83[CEU][hapmap]
rs7831234	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs7834423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835948	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836993	1.00[CHB][hapmap]
rs7838125	0.83[AFR][1000 genomes]
rs7843038	0.89[YRI][hapmap]
rs7843077	0.92[CEU][hapmap]
rs7845334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846184	0.92[YRI][hapmap]
rs884839	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67036800-67047000	Enhancers	NHDF-Ad	bronchial
2	chr8:67036800-67047200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:67039000-67048800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:67040200-67050000	Enhancers	Adipose Nuclei	Adipose
5	chr8:67042400-67047200	Enhancers	Fetal Muscle Leg	muscle
6	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:67043400-67047400	Genic enhancers	HSMM	muscle
8	chr8:67044000-67049200	Weak transcription	Right Atrium	heart
9	chr8:67044000-67057800	Weak transcription	Liver	Liver
10	chr8:67044200-67049800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:67044600-67046800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:67045000-67046800	Enhancers	HSMMtube	muscle
13	chr8:67045400-67049400	Weak transcription	Psoas Muscle	Psoas
14	chr8:67045600-67047000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:67045600-67047000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:67045600-67047000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:67045600-67047200	Weak transcription	Left Ventricle	heart
18	chr8:67045600-67047200	Weak transcription	Right Ventricle	heart
19	chr8:67045600-67049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:67045600-67049400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:67045800-67046800	Enhancers	Osteobl	bone
22	chr8:67045800-67049200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:67046000-67047000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr8:67046000-67049000	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr8:67046000-67049200	Weak transcription	HMEC	breast
26	chr8:67046000-67049200	Weak transcription	NHEK	skin
27	chr8:67046000-67049400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:67046200-67047000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:67046200-67047000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr8:67046200-67047800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:67046200-67049200	Weak transcription	NH-A	brain
32	chr8:67046200-67049600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:67046400-67046800	Flanking Active TSS	Fetal Heart	heart
34	chr8:67046400-67047000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr8:67046400-67049000	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr8:67046400-67049200	Weak transcription	NHLF	lung
37	chr8:67046600-67047000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:67046600-67051200	Weak transcription	A549	lung

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