Variant report

Variant	rs16932535
Chromosome Location	chr8:67040469-67040470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67029942..67032233-chr8:67040282..67042706,2	MCF-7	breast:
2	chr8:67038868..67041219-chr8:67343383..67346327,3	MCF-7	breast:
3	chr16:85496045..85498837-chr8:67039520..67042382,2	MCF-7	breast:
4	chr8:67024747..67027371-chr8:67038783..67042182,4	MCF-7	breast:
5	chr8:67035224..67038920-chr8:67039604..67043396,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10081623	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10091625	0.97[EUR][1000 genomes]
rs10093091	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs10099957	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10104916	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs10107870	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109602	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113208	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs10448012	0.97[EUR][1000 genomes]
rs1044938	0.97[EUR][1000 genomes]
rs1044942	0.97[EUR][1000 genomes]
rs10957367	0.87[EUR][1000 genomes]
rs11986216	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11990370	0.97[EUR][1000 genomes]
rs11997416	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs12156080	0.97[EUR][1000 genomes]
rs12156157	0.97[EUR][1000 genomes]
rs16932527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932564	0.87[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932632	0.97[EUR][1000 genomes]
rs1814583	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28421720	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28542552	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28703095	0.97[EUR][1000 genomes]
rs3176921	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs4279579	0.96[EUR][1000 genomes]
rs4503082	1.00[EUR][1000 genomes]
rs5030877	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs56394731	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472252	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472254	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6472255	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6472256	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6472257	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs6990624	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6996265	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6998761	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6999780	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs7003017	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003450	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7006903	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7008244	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7013524	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs7816410	0.97[EUR][1000 genomes]
rs7818902	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7820617	0.87[CEU][hapmap];0.93[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822243	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7823108	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7823304	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7826464	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7827407	1.00[EUR][1000 genomes]
rs7828111	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7830926	1.00[EUR][1000 genomes]
rs7831234	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838500	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7842707	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7842761	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7843038	0.87[CEU][hapmap];0.93[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843605	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7846184	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9694082	0.87[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67036800-67044800	Weak transcription	Pancreas	Pancrea
2	chr8:67036800-67044800	Weak transcription	Spleen	Spleen
3	chr8:67036800-67046400	Enhancers	NHLF	lung
4	chr8:67036800-67047000	Enhancers	NHDF-Ad	bronchial
5	chr8:67036800-67047200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:67037200-67040600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:67037200-67042200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:67037400-67040600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:67037400-67042400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:67037600-67041800	Weak transcription	Hela-S3	cervix
11	chr8:67037800-67040800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:67037800-67041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:67038000-67040600	Weak transcription	HMEC	breast
14	chr8:67038800-67040800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr8:67038800-67042600	Active TSS	Fetal Muscle Trunk	muscle
16	chr8:67038800-67042600	Active TSS	Right Atrium	heart
17	chr8:67038800-67043800	Active TSS	Right Ventricle	heart
18	chr8:67039000-67040800	Active TSS	HSMM	muscle
19	chr8:67039000-67048800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr8:67039200-67041600	Active TSS	Left Ventricle	heart
21	chr8:67039200-67042400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr8:67039400-67040800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:67039400-67042400	Weak transcription	GM12878-XiMat	blood
24	chr8:67039400-67043600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:67039600-67040600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr8:67039600-67040600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:67039600-67040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:67039600-67040800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr8:67039600-67042400	Weak transcription	Placenta	Placenta
30	chr8:67039800-67040800	Active TSS	Liver	Liver
31	chr8:67040000-67042600	Enhancers	Placenta Amnion	Placenta Amnion
32	chr8:67040200-67040800	Flanking Active TSS	HSMMtube	muscle
33	chr8:67040200-67041000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:67040200-67042200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr8:67040200-67042800	Enhancers	NH-A	brain
36	chr8:67040200-67043000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:67040200-67043600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:67040200-67043600	Enhancers	Osteobl	bone
39	chr8:67040200-67045400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:67040200-67050000	Enhancers	Adipose Nuclei	Adipose
41	chr8:67040400-67040600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr8:67040400-67040600	Enhancers	Psoas Muscle	Psoas
43	chr8:67040400-67040600	Active TSS	Stomach Smooth Muscle	stomach
44	chr8:67040400-67040800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:67040400-67040800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:67040400-67040800	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr8:67040400-67040800	Genic enhancers	A549	lung
48	chr8:67040400-67041000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:67040400-67041000	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr8:67040400-67041000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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