Variant report

Variant	rs1044938
Chromosome Location	chr8:67109225-67109226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67107945..67111681-chr8:67112368..67115514,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM55-1	chr8:67108960-67109921	XLOC_006827
2	lnc-TRIM55-1	chr8:67108960-67109547	XLOC_006827
3	lnc-TRIM55-1	chr8:67108960-67109550	ENSG00000253138.1
4	lnc-TRIM55-1	chr8:67108960-67109554	NONHSAT127012

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10081623	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs10091625	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092687	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs10093091	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10095931	0.83[YRI][hapmap]
rs10099957	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs10101457	0.91[YRI][hapmap]
rs10104916	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10107870	0.97[EUR][1000 genomes]
rs10109602	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs10448012	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1044942	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10957367	0.84[EUR][1000 genomes]
rs11986216	0.87[CEU][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11986805	0.82[YRI][hapmap]
rs11990370	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997416	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12156080	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12156157	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334408	0.85[GIH][hapmap];0.86[YRI][hapmap]
rs16932527	0.97[EUR][1000 genomes]
rs16932535	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs16932564	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs16932632	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1814583	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421720	0.97[EUR][1000 genomes]
rs28542552	0.97[EUR][1000 genomes]
rs28703095	1.00[EUR][1000 genomes]
rs3176921	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4279579	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4366069	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs4495409	0.83[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap]
rs4503082	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5030877	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56394731	0.97[EUR][1000 genomes]
rs6472244	0.83[GIH][hapmap]
rs6472251	0.88[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap]
rs6472252	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs6472254	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472255	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472256	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472257	1.00[CEU][hapmap];0.83[TSI][hapmap];0.94[EUR][1000 genomes]
rs6982394	0.83[GIH][hapmap]
rs6986947	0.83[GIH][hapmap]
rs6988195	0.84[YRI][hapmap]
rs6990486	0.83[GIH][hapmap]
rs6990624	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6996265	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6998258	0.83[GIH][hapmap]
rs6998761	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6999780	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs7003017	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs7003450	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7006209	0.83[GIH][hapmap]
rs7006903	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7008244	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs7008359	0.86[YRI][hapmap]
rs7008578	0.86[YRI][hapmap]
rs7013524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7816410	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818902	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7820617	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7822243	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7823108	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823304	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826464	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7827407	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7828111	0.97[EUR][1000 genomes]
rs7830926	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7831234	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7834423	0.88[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap]
rs7835948	0.83[ASW][hapmap];0.86[YRI][hapmap]
rs7838125	0.97[EUR][1000 genomes]
rs7838500	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7842707	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7842761	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7843038	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7843605	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7845334	0.86[YRI][hapmap]
rs7846184	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs9694082	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv972231	chr8:67104192-67114014	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67104200-67112000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:67108400-67109400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:67108400-67109400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:67108400-67111000	Enhancers	Placenta	Placenta

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