Variant report

Variant	rs28421720
Chromosome Location	chr8:67079768-67079769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67079708..67082330-chr8:67318402..67319910,2	MCF-7	breast:
2	chr8:67078813..67081447-chr8:67083472..67085434,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10081623	0.97[EUR][1000 genomes]
rs10091625	0.97[EUR][1000 genomes]
rs10093091	1.00[EUR][1000 genomes]
rs10099957	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10104916	1.00[EUR][1000 genomes]
rs10107870	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109602	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10448012	0.97[EUR][1000 genomes]
rs1044938	0.97[EUR][1000 genomes]
rs1044942	0.97[EUR][1000 genomes]
rs10957367	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11986216	1.00[EUR][1000 genomes]
rs11990370	0.97[EUR][1000 genomes]
rs11997416	1.00[EUR][1000 genomes]
rs12156080	0.97[EUR][1000 genomes]
rs12156157	0.97[EUR][1000 genomes]
rs16932527	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932535	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932564	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932632	0.97[EUR][1000 genomes]
rs1814583	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28542552	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28703095	0.97[EUR][1000 genomes]
rs3176921	1.00[EUR][1000 genomes]
rs4279579	0.96[EUR][1000 genomes]
rs4503082	1.00[EUR][1000 genomes]
rs5030877	1.00[EUR][1000 genomes]
rs56394731	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472252	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472254	1.00[EUR][1000 genomes]
rs6472255	1.00[EUR][1000 genomes]
rs6472256	1.00[EUR][1000 genomes]
rs6472257	0.97[EUR][1000 genomes]
rs6990624	1.00[EUR][1000 genomes]
rs6996265	1.00[EUR][1000 genomes]
rs6998761	1.00[EUR][1000 genomes]
rs6999780	0.97[EUR][1000 genomes]
rs7003017	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003450	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7006903	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7008244	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7013524	0.97[EUR][1000 genomes]
rs7816410	0.97[EUR][1000 genomes]
rs7818902	1.00[EUR][1000 genomes]
rs7820617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822243	1.00[EUR][1000 genomes]
rs7823108	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7823304	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7826464	1.00[EUR][1000 genomes]
rs7827407	1.00[EUR][1000 genomes]
rs7828111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7830926	1.00[EUR][1000 genomes]
rs7831234	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838125	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838500	1.00[EUR][1000 genomes]
rs7842707	1.00[EUR][1000 genomes]
rs7842761	1.00[EUR][1000 genomes]
rs7843038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843605	1.00[EUR][1000 genomes]
rs7846184	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9694082	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67070200-67080200	Weak transcription	Psoas Muscle	Psoas
2	chr8:67074200-67083000	Strong transcription	HSMM	muscle
3	chr8:67076600-67086600	Weak transcription	Liver	Liver
4	chr8:67077000-67080200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:67077800-67080800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:67078600-67081000	Genic enhancers	HSMMtube	muscle
7	chr8:67078800-67081600	Enhancers	Fetal Muscle Leg	muscle
8	chr8:67078800-67081800	Genic enhancers	Fetal Heart	heart
9	chr8:67079000-67079800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
10	chr8:67079000-67080000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:67079000-67080200	Weak transcription	NHLF	lung
12	chr8:67079000-67080200	Weak transcription	Osteobl	bone
13	chr8:67079000-67088600	Weak transcription	NH-A	brain
14	chr8:67079200-67080400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:67079400-67080000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:67079400-67080200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:67079400-67080600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:67079400-67080600	Weak transcription	Right Ventricle	heart
19	chr8:67079400-67085800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:67079600-67080000	Weak transcription	Left Ventricle	heart
21	chr8:67079600-67080000	Weak transcription	Right Atrium	heart
22	chr8:67079600-67083000	Strong transcription	Muscle Satellite Cultured Cells	--

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