Variant report

Variant	rs12156080
Chromosome Location	chr8:67111633-67111634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67111438..67113185-chr8:67115882..67118141,2	K562	blood:
2	chr8:67107945..67111681-chr8:67112368..67115514,5	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10081623	0.94[EUR][1000 genomes]
rs10091625	1.00[EUR][1000 genomes]
rs10093091	0.97[EUR][1000 genomes]
rs10098823	1.00[CEU][hapmap]
rs10099957	0.97[EUR][1000 genomes]
rs10104916	0.97[EUR][1000 genomes]
rs10107870	0.97[EUR][1000 genomes]
rs10109602	0.97[EUR][1000 genomes]
rs10448012	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1044938	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1044942	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10957367	0.84[EUR][1000 genomes]
rs11986216	0.97[EUR][1000 genomes]
rs11990370	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997416	0.97[EUR][1000 genomes]
rs12156157	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932527	0.97[EUR][1000 genomes]
rs16932535	0.97[EUR][1000 genomes]
rs16932564	0.97[EUR][1000 genomes]
rs16932632	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1814583	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421720	0.97[EUR][1000 genomes]
rs28542552	0.97[EUR][1000 genomes]
rs28703095	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3176921	0.97[EUR][1000 genomes]
rs4279579	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4503082	0.97[EUR][1000 genomes]
rs5030877	0.97[EUR][1000 genomes]
rs56394731	0.97[EUR][1000 genomes]
rs6472244	1.00[CEU][hapmap]
rs6472252	0.97[EUR][1000 genomes]
rs6472254	0.97[EUR][1000 genomes]
rs6472255	0.97[EUR][1000 genomes]
rs6472256	0.97[EUR][1000 genomes]
rs6472257	0.94[EUR][1000 genomes]
rs6982394	1.00[CEU][hapmap]
rs6986947	1.00[CEU][hapmap]
rs6990486	1.00[CEU][hapmap]
rs6990624	0.97[EUR][1000 genomes]
rs6992031	1.00[CEU][hapmap]
rs6996265	0.97[EUR][1000 genomes]
rs6998258	1.00[CEU][hapmap]
rs6998761	0.97[EUR][1000 genomes]
rs6999780	0.94[EUR][1000 genomes]
rs7003017	0.97[EUR][1000 genomes]
rs7003450	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7005882	1.00[CEU][hapmap]
rs7006209	1.00[CEU][hapmap]
rs7006903	0.97[EUR][1000 genomes]
rs7008244	0.94[EUR][1000 genomes]
rs7013524	1.00[EUR][1000 genomes]
rs7816410	1.00[EUR][1000 genomes]
rs7818902	0.97[EUR][1000 genomes]
rs7820617	0.97[EUR][1000 genomes]
rs7822243	0.97[EUR][1000 genomes]
rs7823108	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823304	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826464	0.97[EUR][1000 genomes]
rs7827407	0.97[EUR][1000 genomes]
rs7828111	0.97[EUR][1000 genomes]
rs7830926	0.97[EUR][1000 genomes]
rs7831234	0.97[EUR][1000 genomes]
rs7838125	0.97[EUR][1000 genomes]
rs7838500	0.97[EUR][1000 genomes]
rs7839635	1.00[CEU][hapmap]
rs7842707	0.97[EUR][1000 genomes]
rs7842761	0.97[EUR][1000 genomes]
rs7843038	0.97[EUR][1000 genomes]
rs7843436	1.00[CEU][hapmap]
rs7843605	0.97[EUR][1000 genomes]
rs7846184	0.94[EUR][1000 genomes]
rs884325	1.00[CEU][hapmap]
rs9694082	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv972231	chr8:67104192-67114014	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67104200-67112000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:67111000-67112200	Weak transcription	Placenta	Placenta
3	chr8:67111600-67112200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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