Variant report

Variant	rs10957367
Chromosome Location	chr8:67060048-67060049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10081623	0.87[EUR][1000 genomes]
rs10091625	0.84[EUR][1000 genomes]
rs10093091	0.87[EUR][1000 genomes]
rs10099957	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10104916	0.87[EUR][1000 genomes]
rs10107870	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10109602	0.87[EUR][1000 genomes]
rs10448012	0.84[EUR][1000 genomes]
rs1044938	0.84[EUR][1000 genomes]
rs1044942	0.84[EUR][1000 genomes]
rs11986216	0.87[EUR][1000 genomes]
rs11990370	0.84[EUR][1000 genomes]
rs11997416	0.87[EUR][1000 genomes]
rs12156080	0.84[EUR][1000 genomes]
rs12156157	0.84[EUR][1000 genomes]
rs16932527	0.87[EUR][1000 genomes]
rs16932535	0.87[EUR][1000 genomes]
rs16932564	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16932632	0.84[EUR][1000 genomes]
rs1814583	0.84[EUR][1000 genomes]
rs28421720	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28542552	0.87[EUR][1000 genomes]
rs28703095	0.84[EUR][1000 genomes]
rs3176921	0.87[EUR][1000 genomes]
rs4279579	0.83[EUR][1000 genomes]
rs4503082	0.87[EUR][1000 genomes]
rs5030877	0.87[EUR][1000 genomes]
rs56394731	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6472252	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6472254	0.87[EUR][1000 genomes]
rs6472255	0.87[EUR][1000 genomes]
rs6472256	0.87[EUR][1000 genomes]
rs6472257	0.84[EUR][1000 genomes]
rs6990624	0.87[EUR][1000 genomes]
rs6996265	0.87[EUR][1000 genomes]
rs6998761	0.87[EUR][1000 genomes]
rs6999780	0.84[EUR][1000 genomes]
rs7003017	0.87[EUR][1000 genomes]
rs7003450	0.84[EUR][1000 genomes]
rs7006903	0.87[EUR][1000 genomes]
rs7008244	0.87[EUR][1000 genomes]
rs7013524	0.84[EUR][1000 genomes]
rs7816410	0.84[EUR][1000 genomes]
rs7818902	0.87[EUR][1000 genomes]
rs7820617	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7822243	0.87[EUR][1000 genomes]
rs7823108	0.84[EUR][1000 genomes]
rs7823304	0.84[EUR][1000 genomes]
rs7826464	0.87[EUR][1000 genomes]
rs7827407	0.87[EUR][1000 genomes]
rs7828111	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7830926	0.87[EUR][1000 genomes]
rs7831234	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7838125	0.87[EUR][1000 genomes]
rs7838500	0.87[EUR][1000 genomes]
rs7842707	0.87[EUR][1000 genomes]
rs7842761	0.87[EUR][1000 genomes]
rs7843038	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7843605	0.87[EUR][1000 genomes]
rs7846184	0.84[EUR][1000 genomes]
rs9694082	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:67051800-67066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:67053400-67066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:67053800-67062800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:67053800-67066400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:67055600-67068800	Weak transcription	Right Atrium	heart
7	chr8:67055800-67064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:67055800-67068800	Weak transcription	Right Ventricle	heart
9	chr8:67058000-67060600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:67058200-67064200	Weak transcription	Left Ventricle	heart
11	chr8:67058600-67071400	Weak transcription	Liver	Liver
12	chr8:67059200-67064000	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:67059200-67064200	Weak transcription	Psoas Muscle	Psoas
14	chr8:67059200-67066400	Weak transcription	NHLF	lung
15	chr8:67059400-67061200	Weak transcription	Fetal Heart	heart
16	chr8:67059400-67066000	Strong transcription	HSMM	muscle
17	chr8:67059400-67066000	Weak transcription	NHDF-Ad	bronchial
18	chr8:67059600-67061800	Weak transcription	HSMMtube	muscle
19	chr8:67059600-67062000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:67059600-67065400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:67059600-67066600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:67059600-67066800	Weak transcription	Osteobl	bone
23	chr8:67059600-67067000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links