Variant report

Variant	rs3176921
Chromosome Location	chr8:67091379-67091380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:67086459-67091433	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr8:67086579-67091534	PFSK-1	brain:	n/a	n/a
3	REST	chr8:67089041-67091399	PFSK-1	brain:	n/a	chr8:67089789-67089807 chr8:67089878-67089887 chr8:67090546-67090559 chr8:67089879-67089897 chr8:67089884-67089898 chr8:67089878-67089898 chr8:67089881-67089894 chr8:67089883-67089892 chr8:67089878-67089891 chr8:67089886-67089896 chr8:67089881-67089894 chr8:67089878-67089898 chr8:67090551-67090561 chr8:67089878-67089898

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67088502..67091443-chr8:67341463..67343865,2	MCF-7	breast:

Variant related genes	Relation type
CRH	TF binding region
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10081623	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10091625	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10092687	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs10093091	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095931	0.83[YRI][hapmap]
rs10099957	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10101457	0.91[YRI][hapmap]
rs10104916	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107870	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109602	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10448012	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1044938	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1044942	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10957367	0.87[EUR][1000 genomes]
rs11986216	0.87[CEU][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986805	0.82[YRI][hapmap]
rs11990370	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11997416	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12156080	0.97[EUR][1000 genomes]
rs12156157	0.97[EUR][1000 genomes]
rs12334408	0.85[GIH][hapmap];0.86[YRI][hapmap]
rs16932527	1.00[EUR][1000 genomes]
rs16932535	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs16932564	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16932632	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1814583	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28421720	1.00[EUR][1000 genomes]
rs28542552	1.00[EUR][1000 genomes]
rs28703095	0.97[EUR][1000 genomes]
rs4279579	0.96[EUR][1000 genomes]
rs4366069	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs4419797	0.81[LWK][hapmap]
rs4495409	0.83[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap]
rs4503082	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030877	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56394731	1.00[EUR][1000 genomes]
rs6472244	0.83[GIH][hapmap]
rs6472251	0.88[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap]
rs6472252	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6472254	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472255	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472256	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472257	1.00[CEU][hapmap];0.83[TSI][hapmap];0.97[EUR][1000 genomes]
rs6982394	0.83[GIH][hapmap]
rs6986947	0.83[GIH][hapmap]
rs6988195	0.84[YRI][hapmap]
rs6990486	0.83[GIH][hapmap]
rs6990624	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996265	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6998258	0.83[GIH][hapmap]
rs6998761	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999780	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes]
rs7003017	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7003450	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7006209	0.83[GIH][hapmap]
rs7006903	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7008244	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs7008359	0.86[YRI][hapmap]
rs7008578	0.86[YRI][hapmap]
rs7013524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7816410	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7818902	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7820617	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7822243	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823108	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7823304	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7826464	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7827407	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7828111	1.00[EUR][1000 genomes]
rs7830926	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7831234	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7834423	0.88[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap]
rs7835948	0.83[ASW][hapmap];0.86[YRI][hapmap]
rs7838125	1.00[EUR][1000 genomes]
rs7838500	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842707	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842761	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843038	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7843605	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845334	0.86[YRI][hapmap]
rs7846184	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs9694082	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67090800-67092200	Enhancers	Cortex derived primary cultured neurospheres	brain

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