Variant report

Variant	rs4419797
Chromosome Location	chr8:67101269-67101270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10100725	0.81[ASW][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap]
rs10112381	0.82[YRI][hapmap]
rs10113415	0.86[CHB][hapmap]
rs10808748	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11997605	0.86[CHB][hapmap]
rs13252033	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs13253380	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs13257752	0.90[CHB][hapmap]
rs13264487	0.85[CHB][hapmap]
rs13266516	0.85[CHB][hapmap]
rs13279522	0.80[CHB][hapmap]
rs13282248	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs16932626	0.99[ASN][1000 genomes]
rs1870393	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1870394	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2004424	0.98[ASN][1000 genomes]
rs3176921	0.81[LWK][hapmap]
rs3210836	0.99[ASN][1000 genomes]
rs4262310	0.86[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap]
rs4613981	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4628244	0.95[CHB][hapmap]
rs4737225	0.99[ASN][1000 genomes]
rs4737768	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6159	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6472246	0.88[ASW][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.90[GIH][hapmap]
rs6472247	0.90[CHB][hapmap]
rs6472248	0.86[CHB][hapmap]
rs6990045	0.81[ASW][hapmap];0.85[CHB][hapmap];0.80[GIH][hapmap]
rs6990839	0.86[CHB][hapmap]
rs6999100	0.82[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.91[JPT][hapmap];0.91[LWK][hapmap];0.98[MKK][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs7009913	0.85[CHB][hapmap]
rs7010033	0.86[CHB][hapmap]
rs7014971	0.90[CHB][hapmap];0.90[CHD][hapmap]
rs7016922	0.90[CHB][hapmap]
rs7017358	0.90[CHB][hapmap]
rs7824630	0.86[CHB][hapmap]
rs7825257	0.90[CHB][hapmap]
rs7827531	0.86[CHB][hapmap]
rs7835214	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7843077	0.86[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap]
rs884839	0.86[CHB][hapmap];0.93[GIH][hapmap]
rs9298110	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67098800-67102000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:67098800-67103800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:67100000-67102000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:67100200-67102000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:67100200-67103000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links