Variant report
| Variant | rs3210836 |
|---|---|
| Chromosome Location | chr8:67105091-67105092 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:6)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TRIM55-1 | chr8:67104346-67105202 | XLOC_006827 |
| 2 | lnc-TRIM55-1 | chr8:67105068-67105202 | ENSG00000253138.1 |
| 3 | lnc-TRIM55-1 | chr8:67105068-67105206 | ENSG00000253138.1 |
| 4 | lnc-TRIM55-1 | chr8:67104944-67105202 | ENSG00000253138.1 |
| 5 | lnc-TRIM55-1 | chr8:67104346-67105202 | ENSG00000253138.1 |
| 6 | lnc-TRIM55-1 | chr8:67104349-67105202 | NONHSAT127012 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10808748 | 0.99[ASN][1000 genomes] |
| rs11778990 | 0.83[EUR][1000 genomes] |
| rs11780171 | 0.89[EUR][1000 genomes] |
| rs11785596 | 0.89[EUR][1000 genomes] |
| rs13252033 | 0.89[EUR][1000 genomes] |
| rs13253380 | 0.92[EUR][1000 genomes] |
| rs13261922 | 0.89[EUR][1000 genomes] |
| rs13262438 | 0.83[EUR][1000 genomes] |
| rs13274510 | 0.89[EUR][1000 genomes] |
| rs13276881 | 0.89[EUR][1000 genomes] |
| rs13282248 | 0.92[EUR][1000 genomes] |
| rs16932626 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1870393 | 0.99[ASN][1000 genomes] |
| rs1870394 | 0.99[ASN][1000 genomes] |
| rs2004424 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4419797 | 0.99[ASN][1000 genomes] |
| rs4613981 | 0.98[ASN][1000 genomes] |
| rs4737225 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4737768 | 0.99[ASN][1000 genomes] |
| rs6159 | 0.88[ASN][1000 genomes] |
| rs6472247 | 0.89[EUR][1000 genomes] |
| rs6999100 | 0.88[ASN][1000 genomes] |
| rs7009913 | 0.89[EUR][1000 genomes] |
| rs7010033 | 0.89[EUR][1000 genomes] |
| rs7014971 | 0.89[EUR][1000 genomes] |
| rs7016922 | 0.89[EUR][1000 genomes] |
| rs7017358 | 0.89[EUR][1000 genomes] |
| rs71515499 | 0.89[EUR][1000 genomes] |
| rs7835214 | 0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | esv3414665 | chr8:66936816-67381935 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv972231 | chr8:67104192-67114014 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:67103800-67105400 | Enhancers | Placenta | Placenta |
| 2 | chr8:67104200-67112000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 3 | chr8:67104600-67105600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
