Variant report

Variant	rs11778990
Chromosome Location	chr8:66969348-66969349
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66967974..66973284-chr8:66974182..66976883,4	K562	blood:
2	chr8:66969033..66972090-chr8:67340125..67343185,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction
ENSG00000246145	Chromatin interaction
ENSG00000179041	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10100725	0.81[ASN][1000 genomes]
rs11780171	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11785596	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11997605	0.81[ASN][1000 genomes]
rs13252033	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13253380	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13256041	0.95[AMR][1000 genomes]
rs13257752	0.81[ASN][1000 genomes]
rs13261922	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13262438	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13274510	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13276881	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13279522	0.83[ASN][1000 genomes]
rs13282248	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16932626	0.83[EUR][1000 genomes]
rs2004424	0.83[EUR][1000 genomes]
rs3210836	0.83[EUR][1000 genomes]
rs4737225	0.83[EUR][1000 genomes]
rs6472247	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6990045	0.81[ASN][1000 genomes]
rs7009913	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7010033	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7014971	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7016922	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7017358	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71515499	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7835214	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66968400-66970400	Weak transcription	Thymus	Thymus

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