Variant report

Variant	rs7010033
Chromosome Location	chr8:66975921-66975922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66975090..66978056-chr8:67341293..67343047,2	MCF-7	breast:
2	chr8:66971479..66974707-chr8:66974890..66977947,4	K562	blood:
3	chr8:66974900..66977338-chr8:67024571..67027065,2	MCF-7	breast:
4	chr8:66967974..66973284-chr8:66974182..66976883,4	K562	blood:

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10100725	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10113415	0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10957366	0.84[ASN][1000 genomes]
rs11778990	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11780171	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11785596	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11993997	0.84[ASN][1000 genomes]
rs11997605	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs13252033	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13252592	1.00[JPT][hapmap]
rs13253129	0.87[ASN][1000 genomes]
rs13253380	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13256041	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs13257752	0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13259331	1.00[CEU][hapmap]
rs13261922	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13262438	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13264487	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs13266516	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs13274510	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13276881	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13279522	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13282248	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16932626	0.89[EUR][1000 genomes]
rs1870394	0.86[CHB][hapmap]
rs2004424	0.89[EUR][1000 genomes]
rs28825143	0.88[ASN][1000 genomes]
rs3210836	0.89[EUR][1000 genomes]
rs4262310	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4419797	0.86[CHB][hapmap]
rs4628244	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4737225	0.89[EUR][1000 genomes]
rs6472246	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6472247	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472248	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6990045	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6990839	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6999100	0.91[CHB][hapmap]
rs7006611	0.94[JPT][hapmap]
rs7009913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014971	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7016922	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7017358	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71515499	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7824630	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7825257	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7827531	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7835214	0.91[CHB][hapmap];0.97[EUR][1000 genomes]
rs7843077	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs884839	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs9298109	0.95[JPT][hapmap]
rs9298110	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66971200-66976600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:66973600-66977600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:66974400-66976200	Weak transcription	A549	lung
4	chr8:66974400-66977600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:66974600-66976200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:66974600-66976200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:66975000-66977600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr8:66975200-66977800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:66975400-66976400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:66975400-66976400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:66975600-66977600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:66975600-66977800	Enhancers	NHDF-Ad	bronchial
13	chr8:66975800-66977200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:66975800-66977200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:66975800-66977600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:66975800-66977600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:66975800-66977600	Enhancers	Osteobl	bone
18	chr8:66975800-66977800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:66975800-66977800	Enhancers	Dnd41	blood
20	chr8:66975800-66977800	Enhancers	HMEC	breast
21	chr8:66975800-66977800	Enhancers	NHLF	lung

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