Variant report

Variant	rs10957366
Chromosome Location	chr8:67029940-67029941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67026046..67028476-chr8:67029113..67032451,3	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10092687	0.92[CEU][hapmap]
rs10095931	0.84[CEU][hapmap]
rs10100725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10101457	0.90[CEU][hapmap]
rs10112381	0.86[YRI][hapmap]
rs10113208	0.92[CEU][hapmap]
rs10113415	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11780171	0.96[ASN][1000 genomes]
rs11785596	0.94[ASN][1000 genomes]
rs11993997	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997605	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12334408	0.92[CEU][hapmap]
rs13252033	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13252592	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs13253129	0.86[ASN][1000 genomes]
rs13253380	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13257752	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs13261922	0.96[ASN][1000 genomes]
rs13262438	0.80[ASN][1000 genomes]
rs13264487	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13266516	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13274510	0.94[ASN][1000 genomes]
rs13276881	0.85[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs13279522	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13282248	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1870394	0.86[CHB][hapmap]
rs28825143	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4262310	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4366069	0.92[CEU][hapmap]
rs4419797	0.86[CHB][hapmap]
rs4495409	0.84[CEU][hapmap]
rs4628244	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6472246	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6472247	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6472248	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6472251	0.92[CEU][hapmap]
rs6988195	0.83[CEU][hapmap]
rs6990045	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6990839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6999100	0.91[CHB][hapmap];0.81[YRI][hapmap];0.85[ASN][1000 genomes]
rs7006611	0.94[JPT][hapmap]
rs7008359	0.84[CEU][hapmap]
rs7008578	0.92[CEU][hapmap]
rs7009913	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7010033	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7014971	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7016922	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7017358	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs71515499	0.88[ASN][1000 genomes]
rs7824630	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7825257	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7827531	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834423	0.92[CEU][hapmap]
rs7835214	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs7835948	0.84[CEU][hapmap]
rs7843077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7845334	0.92[CEU][hapmap]
rs884839	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9298109	0.91[JPT][hapmap]
rs9298110	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67026200-67032600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:67027000-67030600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr8:67027200-67030600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:67027200-67030600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:67027200-67030600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:67027200-67030600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:67027200-67030600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr8:67027200-67030800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr8:67027200-67031000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:67027200-67031000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:67027200-67031400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:67027200-67031600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:67027200-67032200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:67027200-67032200	Weak transcription	Left Ventricle	heart
15	chr8:67027200-67035800	Weak transcription	Psoas Muscle	Psoas
16	chr8:67027200-67036200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:67027200-67036200	Weak transcription	Right Ventricle	heart
18	chr8:67027400-67031000	Weak transcription	HSMMtube	muscle
19	chr8:67027400-67032200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:67027400-67032600	Weak transcription	Hela-S3	cervix
21	chr8:67027400-67035600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:67027600-67030600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr8:67027600-67032400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:67027800-67032200	Weak transcription	NH-A	brain
25	chr8:67027800-67033800	Weak transcription	Fetal Muscle Leg	muscle
26	chr8:67027800-67036400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:67028000-67030600	Weak transcription	Primary T cells from cord blood	blood
28	chr8:67028000-67030600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:67028000-67030600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr8:67028000-67030600	Weak transcription	HSMM	muscle
31	chr8:67028000-67030800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr8:67028000-67031000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:67028000-67031600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:67028000-67031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:67028000-67031800	Weak transcription	NHEK	skin
36	chr8:67028000-67032000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr8:67028000-67032200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:67028000-67032400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:67028000-67032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr8:67028000-67032600	Weak transcription	Placenta	Placenta
41	chr8:67028000-67032800	Weak transcription	Adipose Nuclei	Adipose
42	chr8:67028000-67032800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:67028000-67033600	Weak transcription	HUVEC	blood vessel
44	chr8:67028000-67034200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr8:67028000-67036400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr8:67028200-67030600	Weak transcription	K562	blood
47	chr8:67028200-67030800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:67028200-67030800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:67028200-67030800	Weak transcription	Fetal Heart	heart
50	chr8:67028200-67031000	Weak transcription	HMEC	breast

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