Variant report

Variant	rs7825257
Chromosome Location	chr8:67050565-67050566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67041475..67043623-chr8:67049096..67052044,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10100725	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10112381	0.91[YRI][hapmap]
rs10113415	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10808748	0.95[EUR][1000 genomes]
rs10957366	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11780171	0.99[ASN][1000 genomes]
rs11785596	0.97[ASN][1000 genomes]
rs11993997	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11997605	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[ASN][1000 genomes]
rs13252033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13252592	0.95[JPT][hapmap]
rs13253129	0.83[ASN][1000 genomes]
rs13253380	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13257752	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs13261922	0.99[ASN][1000 genomes]
rs13262438	0.83[ASN][1000 genomes]
rs13264487	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13266516	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13274510	0.97[ASN][1000 genomes]
rs13276881	0.89[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs13279522	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13282248	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1870393	0.95[EUR][1000 genomes]
rs1870394	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[EUR][1000 genomes]
rs28825143	0.84[ASN][1000 genomes]
rs4262310	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4419797	0.90[CHB][hapmap]
rs4613981	0.95[EUR][1000 genomes]
rs4628244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4737768	0.95[EUR][1000 genomes]
rs6159	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6472246	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[ASN][1000 genomes]
rs6472247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6472248	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6990045	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6990839	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6999100	0.90[CEU][hapmap];0.95[CHB][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7006611	0.94[JPT][hapmap]
rs7009913	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7010033	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7014971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7016922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7017358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs71515499	0.91[ASN][1000 genomes]
rs7824630	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7827531	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7835214	0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs7843077	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs884839	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9298109	0.91[JPT][hapmap]
rs9298110	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:67044000-67057800	Weak transcription	Liver	Liver
3	chr8:67046600-67051200	Weak transcription	A549	lung
4	chr8:67047000-67052000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:67047600-67055000	Genic enhancers	HSMMtube	muscle
6	chr8:67048600-67050800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:67048800-67053000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:67049000-67050600	Enhancers	NHDF-Ad	bronchial
9	chr8:67049000-67052000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:67049000-67052800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr8:67049400-67052000	Enhancers	Psoas Muscle	Psoas
12	chr8:67049400-67053800	Enhancers	Left Ventricle	heart
13	chr8:67049600-67051400	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:67049600-67051800	Enhancers	Fetal Heart	heart
15	chr8:67049800-67052800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:67049800-67055800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr8:67050000-67051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:67050000-67051400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:67050000-67051400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:67050000-67052600	Weak transcription	Right Ventricle	heart
21	chr8:67050200-67051000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:67050200-67051200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:67050200-67058200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr8:67050400-67051200	Weak transcription	Osteobl	bone
25	chr8:67050400-67051400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:67050400-67051400	Strong transcription	HSMM	muscle
27	chr8:67050400-67051400	Weak transcription	NH-A	brain
28	chr8:67050400-67051600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr8:67050400-67053800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links