Variant report

Variant	rs6159
Chromosome Location	chr8:67089425-67089426
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:67089028..67089742-chr8:67192579..67193437,2	MCF-7	breast:
2	chr8:67053342..67054592-chr8:67089110..67089727,3	MCF-7	breast:
3	chr8:67024833..67027621-chr8:67087272..67089890,2	MCF-7	breast:
4	chr8:66948816..66949782-chr8:67089075..67089736,3	MCF-7	breast:
5	chr8:66976852..66977966-chr8:67088847..67090142,11	MCF-7	breast:
6	chr8:67088502..67091443-chr8:67341463..67343865,2	MCF-7	breast:
7	chr8:66976905..66977498-chr8:67088850..67089625,3	MCF-7	breast:
8	chr8:67088832..67090094-chr8:67333566..67334549,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10808748	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11780171	0.83[ASN][1000 genomes]
rs11785596	0.81[ASN][1000 genomes]
rs13253380	0.83[ASN][1000 genomes]
rs13261922	0.83[ASN][1000 genomes]
rs13274510	0.81[ASN][1000 genomes]
rs13276881	0.81[ASN][1000 genomes]
rs13282248	0.81[ASN][1000 genomes]
rs16932626	0.88[ASN][1000 genomes]
rs1870393	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1870394	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2004424	0.87[ASN][1000 genomes]
rs3210836	0.88[ASN][1000 genomes]
rs4419797	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4613981	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4737225	0.88[ASN][1000 genomes]
rs4737768	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6472247	0.81[ASN][1000 genomes]
rs6999100	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7825257	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7835214	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67088600-67089600	Active TSS	Fetal Brain Female	brain
2	chr8:67088600-67089800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:67088600-67090000	Enhancers	Fetal Intestine Small	intestine
4	chr8:67088800-67089600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr8:67088800-67089600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
6	chr8:67088800-67089600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:67088800-67089600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:67088800-67089600	Flanking Active TSS	Liver	Liver
9	chr8:67088800-67089600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
10	chr8:67088800-67089600	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr8:67088800-67089800	Active TSS	H1 Cell Line	embryonic stem cell
12	chr8:67088800-67089800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr8:67088800-67089800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr8:67088800-67089800	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr8:67088800-67089800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr8:67088800-67089800	Bivalent/Poised TSS	GM12878-XiMat	blood
17	chr8:67088800-67089800	Flanking Active TSS	HMEC	breast
18	chr8:67088800-67090000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:67088800-67090000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:67088800-67090200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
21	chr8:67088800-67090400	Bivalent Enhancer	Fetal Thymus	thymus
22	chr8:67088800-67090600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
23	chr8:67089000-67089600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
24	chr8:67089000-67089600	Active TSS	Brain Germinal Matrix	brain
25	chr8:67089000-67089600	Active TSS	Psoas Muscle	Psoas
26	chr8:67089000-67089600	Active TSS	Right Atrium	heart
27	chr8:67089000-67089600	Active TSS	K562	blood
28	chr8:67089000-67089800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:67089000-67089800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr8:67089000-67089800	Bivalent Enhancer	Primary B cells from cord blood	blood
31	chr8:67089000-67089800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:67089000-67089800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:67089000-67089800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:67089000-67089800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:67089000-67090000	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr8:67089000-67090000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr8:67089000-67090000	Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr8:67089000-67090000	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr8:67089000-67090000	Active TSS	iPS-15b Cell Line	embryonic stem cell
40	chr8:67089000-67090000	Active TSS	iPS-18 Cell Line	embryonic stem cell
41	chr8:67089000-67090000	Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr8:67089000-67090000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr8:67089000-67090000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr8:67089000-67090000	Active TSS	NHDF-Ad	bronchial
45	chr8:67089000-67090200	Active TSS	H9 Cell Line	embryonic stem cell
46	chr8:67089000-67090200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:67089000-67090200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr8:67089000-67090200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
49	chr8:67089000-67090200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
50	chr8:67089000-67090200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

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