Variant report

Variant	rs2004424
Chromosome Location	chr8:67106708-67106709
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM55-1	chr8:67106647-67106750	ENSG00000253138.1

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10100725	0.86[CHB][hapmap]
rs10113415	0.86[CHB][hapmap]
rs10808748	0.98[ASN][1000 genomes]
rs11778990	0.83[EUR][1000 genomes]
rs11780171	0.89[EUR][1000 genomes]
rs11785596	0.89[EUR][1000 genomes]
rs11997605	0.86[CHB][hapmap]
rs13252033	0.90[CHB][hapmap];0.89[EUR][1000 genomes]
rs13253380	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[EUR][1000 genomes]
rs13257752	0.90[CHB][hapmap]
rs13261922	0.89[EUR][1000 genomes]
rs13262438	0.83[EUR][1000 genomes]
rs13264487	0.86[CHB][hapmap]
rs13266516	0.86[CHB][hapmap]
rs13274510	0.89[EUR][1000 genomes]
rs13276881	0.89[EUR][1000 genomes]
rs13279522	0.81[CHB][hapmap]
rs13282248	0.86[CHB][hapmap];0.92[EUR][1000 genomes]
rs16932626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1870393	0.98[ASN][1000 genomes]
rs1870394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3210836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4262310	0.86[CHB][hapmap]
rs4419797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4613981	0.97[ASN][1000 genomes]
rs4628244	0.95[CHB][hapmap]
rs4737225	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4737768	0.98[ASN][1000 genomes]
rs6159	0.87[ASN][1000 genomes]
rs6472246	0.81[CHB][hapmap]
rs6472247	0.91[CHB][hapmap];0.89[EUR][1000 genomes]
rs6472248	0.86[CHB][hapmap]
rs6990045	0.85[CHB][hapmap]
rs6990839	0.86[CHB][hapmap]
rs6999100	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7009913	0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs7010033	0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs7014971	0.90[CHB][hapmap];0.89[EUR][1000 genomes]
rs7016922	0.91[CHB][hapmap];0.89[EUR][1000 genomes]
rs7017358	0.91[CHB][hapmap];0.89[EUR][1000 genomes]
rs71515499	0.89[EUR][1000 genomes]
rs7824630	0.86[CHB][hapmap]
rs7825257	0.91[CHB][hapmap]
rs7827531	0.86[CHB][hapmap]
rs7835214	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7843077	0.86[CHB][hapmap]
rs884839	0.86[CHB][hapmap]
rs9298110	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv972231	chr8:67104192-67114014	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67104200-67112000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:67105400-67107600	Flanking Active TSS	Placenta	Placenta
3	chr8:67105600-67107400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:67106400-67108000	Weak transcription	Fetal Heart	heart

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