Variant report

Variant	rs28825143
Chromosome Location	chr8:66983048-66983049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10100725	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10113415	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10957366	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11780171	0.84[ASN][1000 genomes]
rs11785596	0.87[ASN][1000 genomes]
rs11993997	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11997605	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13252033	0.92[ASN][1000 genomes]
rs13253129	0.99[ASN][1000 genomes]
rs13253380	0.84[ASN][1000 genomes]
rs13257752	0.98[ASN][1000 genomes]
rs13261922	0.84[ASN][1000 genomes]
rs13262438	0.84[ASN][1000 genomes]
rs13264487	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13266516	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13274510	0.87[ASN][1000 genomes]
rs13276881	0.85[ASN][1000 genomes]
rs13279522	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13282248	0.82[ASN][1000 genomes]
rs4262310	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6472246	0.90[ASN][1000 genomes]
rs6472247	0.87[ASN][1000 genomes]
rs6472248	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6990045	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7009913	0.88[ASN][1000 genomes]
rs7010033	0.88[ASN][1000 genomes]
rs7014971	0.92[ASN][1000 genomes]
rs7016922	0.92[ASN][1000 genomes]
rs7017358	0.92[ASN][1000 genomes]
rs71515499	0.92[ASN][1000 genomes]
rs7824630	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7825257	0.84[ASN][1000 genomes]
rs7827531	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7843077	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs884839	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9298110	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66977600-66988200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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