Variant report

Variant	rs13252592
Chromosome Location	chr8:66966248-66966249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66961909..66963523-chr8:66965574..66968530,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10100725	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10113415	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs11778990	0.90[ASN][1000 genomes]
rs11997605	0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13252033	0.81[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs13253129	0.82[ASN][1000 genomes]
rs13253380	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs13257752	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs13262438	0.88[ASN][1000 genomes]
rs13264487	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs13266516	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs13276881	0.81[JPT][hapmap]
rs13279522	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13282248	0.95[JPT][hapmap]
rs28825143	0.83[ASN][1000 genomes]
rs4262310	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4628244	0.95[JPT][hapmap]
rs6472245	0.87[CEU][hapmap]
rs6472246	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6472247	0.95[JPT][hapmap]
rs6472248	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs6990045	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6990839	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap]
rs7006394	0.87[CEU][hapmap]
rs7006611	0.82[CEU][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7009913	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7010033	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7014971	0.81[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7016922	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7017358	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs71515499	0.80[ASN][1000 genomes]
rs7824630	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7825257	0.95[JPT][hapmap]
rs7827531	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7843077	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs884839	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs9298109	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs9298110	0.81[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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