Variant report

Variant	rs6982394
Chromosome Location	chr8:67088477-67088478
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67024833..67027621-chr8:67087272..67089890,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10096789	0.95[EUR][1000 genomes]
rs10098823	1.00[CEU][hapmap]
rs10099957	0.83[GIH][hapmap]
rs10104916	0.83[GIH][hapmap]
rs10109602	0.83[GIH][hapmap]
rs12156080	1.00[CEU][hapmap]
rs13439818	0.90[EUR][1000 genomes]
rs16932564	0.83[GIH][hapmap]
rs3176921	0.83[GIH][hapmap]
rs34083382	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55640054	1.00[EUR][1000 genomes]
rs55691225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55745275	0.95[EUR][1000 genomes]
rs56163324	1.00[EUR][1000 genomes]
rs56176008	0.97[EUR][1000 genomes]
rs57390453	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61738600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472244	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6472245	0.83[GIH][hapmap]
rs6983227	1.00[EUR][1000 genomes]
rs6986947	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6990486	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992031	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6992434	1.00[EUR][1000 genomes]
rs6998258	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs6998761	0.83[GIH][hapmap]
rs6999780	0.83[GIH][hapmap]
rs7005882	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7006209	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7006394	0.83[GIH][hapmap]
rs7006903	0.83[GIH][hapmap]
rs7010547	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7013524	0.83[GIH][hapmap]
rs73236728	0.90[EUR][1000 genomes]
rs749328	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7813194	0.95[EUR][1000 genomes]
rs7813201	0.95[EUR][1000 genomes]
rs7820617	0.83[GIH][hapmap]
rs7822243	0.83[GIH][hapmap]
rs7831234	0.83[GIH][hapmap]
rs7838582	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7839635	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7842761	0.83[GIH][hapmap]
rs7843038	0.83[GIH][hapmap]
rs7843436	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7845017	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs884325	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs959302	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9694082	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67079000-67088600	Weak transcription	NH-A	brain
2	chr8:67080600-67089000	Weak transcription	Psoas Muscle	Psoas
3	chr8:67080800-67088800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:67081000-67088800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:67081000-67089200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:67081200-67089400	Weak transcription	Left Ventricle	heart
7	chr8:67085800-67088600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:67086600-67088800	Enhancers	Liver	Liver
9	chr8:67087000-67088800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:67087000-67089200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:67088000-67088800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:67088200-67088600	Enhancers	HSMMtube	muscle
13	chr8:67088200-67088800	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
14	chr8:67088200-67089000	Genic enhancers	HSMM	muscle
15	chr8:67088200-67089200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr8:67088400-67088600	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr8:67088400-67088600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr8:67088400-67088600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:67088400-67088600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
20	chr8:67088400-67088600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:67088400-67088600	Enhancers	Fetal Brain Female	brain
22	chr8:67088400-67088600	Enhancers	Fetal Kidney	kidney
23	chr8:67088400-67088600	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr8:67088400-67088600	Enhancers	NHDF-Ad	bronchial
25	chr8:67088400-67088600	Enhancers	NHLF	lung
26	chr8:67088400-67088800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr8:67088400-67088800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:67088400-67088800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr8:67088400-67088800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr8:67088400-67088800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:67088400-67088800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:67088400-67088800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:67088400-67088800	Enhancers	Fetal Muscle Leg	muscle
34	chr8:67088400-67089000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr8:67088400-67089000	Flanking Active TSS	A549	lung
36	chr8:67088400-67089000	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr8:67088400-67089200	Bivalent Enhancer	Primary T cells from cord blood	blood
38	chr8:67088400-67089400	Enhancers	Fetal Heart	heart
39	chr8:67088400-67089400	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links