Variant report
| Variant | rs10098823 |
|---|---|
| Chromosome Location | chr8:67095627-67095628 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:67094857..67096918-chr8:67120769..67123061,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10096789 | 1.00[EUR][1000 genomes] |
| rs12156080 | 1.00[CEU][hapmap] |
| rs13439818 | 0.95[EUR][1000 genomes] |
| rs34083382 | 0.87[EUR][1000 genomes] |
| rs55640054 | 0.95[EUR][1000 genomes] |
| rs55691225 | 0.90[EUR][1000 genomes] |
| rs55745275 | 1.00[EUR][1000 genomes] |
| rs56163324 | 0.95[EUR][1000 genomes] |
| rs56176008 | 0.92[EUR][1000 genomes] |
| rs57390453 | 0.95[EUR][1000 genomes] |
| rs61738600 | 0.95[EUR][1000 genomes] |
| rs6472244 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6982394 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6983227 | 0.95[EUR][1000 genomes] |
| rs6986947 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6990486 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6992031 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs6992434 | 0.95[EUR][1000 genomes] |
| rs6998258 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs7005882 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs7006209 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs7010547 | 0.95[EUR][1000 genomes] |
| rs73236728 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs749328 | 0.90[EUR][1000 genomes] |
| rs7813194 | 1.00[EUR][1000 genomes] |
| rs7813201 | 1.00[EUR][1000 genomes] |
| rs7838582 | 0.95[EUR][1000 genomes] |
| rs7839635 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs7843436 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs7845017 | 0.95[EUR][1000 genomes] |
| rs884325 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs959302 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | esv3414665 | chr8:66936816-67381935 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
