Variant report

Variant	rs749328
Chromosome Location	chr8:67106613-67106614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10096789	0.90[EUR][1000 genomes]
rs10099957	0.83[GIH][hapmap]
rs10104916	0.83[GIH][hapmap]
rs10109602	0.83[GIH][hapmap]
rs13439818	0.85[EUR][1000 genomes]
rs16932564	0.83[GIH][hapmap]
rs3176921	0.83[GIH][hapmap]
rs34083382	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55640054	0.95[EUR][1000 genomes]
rs55691225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55745275	0.90[EUR][1000 genomes]
rs56163324	0.95[EUR][1000 genomes]
rs56176008	0.92[EUR][1000 genomes]
rs57390453	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61738600	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6472244	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs6472245	0.83[GIH][hapmap]
rs6982394	0.92[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6983227	0.95[EUR][1000 genomes]
rs6986947	0.85[ASW][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6990486	1.00[ASW][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6992031	0.95[EUR][1000 genomes]
rs6992434	0.95[EUR][1000 genomes]
rs6998258	1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs6998761	0.83[GIH][hapmap]
rs6999780	0.83[GIH][hapmap]
rs7005882	0.95[EUR][1000 genomes]
rs7006209	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7006394	0.83[GIH][hapmap]
rs7006903	0.83[GIH][hapmap]
rs7010547	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7013524	0.83[GIH][hapmap]
rs73236728	0.95[EUR][1000 genomes]
rs7813194	0.90[EUR][1000 genomes]
rs7813201	0.90[EUR][1000 genomes]
rs7820617	0.83[GIH][hapmap]
rs7822243	0.83[GIH][hapmap]
rs7831234	0.83[GIH][hapmap]
rs7838582	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7839635	0.87[EUR][1000 genomes]
rs7842761	0.83[GIH][hapmap]
rs7843038	0.83[GIH][hapmap]
rs7843436	0.95[EUR][1000 genomes]
rs7845017	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs884325	0.95[EUR][1000 genomes]
rs959302	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9694082	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv972231	chr8:67104192-67114014	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67104200-67112000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:67105400-67107600	Flanking Active TSS	Placenta	Placenta
3	chr8:67105600-67107400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:67106400-67108000	Weak transcription	Fetal Heart	heart

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