Variant report

Variant	rs7839635
Chromosome Location	chr8:67050274-67050275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67041475..67043623-chr8:67049096..67052044,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10096789	0.87[EUR][1000 genomes]
rs10098823	1.00[CEU][hapmap]
rs11779150	1.00[CEU][hapmap]
rs12156080	1.00[CEU][hapmap]
rs13439818	0.83[EUR][1000 genomes]
rs34083382	0.84[EUR][1000 genomes]
rs55640054	0.92[EUR][1000 genomes]
rs55691225	0.87[EUR][1000 genomes]
rs55745275	0.87[EUR][1000 genomes]
rs56163324	0.92[EUR][1000 genomes]
rs56176008	0.90[EUR][1000 genomes]
rs57390453	0.92[EUR][1000 genomes]
rs61738600	0.92[EUR][1000 genomes]
rs6472244	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6472250	0.80[YRI][hapmap]
rs6982394	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6983227	0.92[EUR][1000 genomes]
rs6986947	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6990486	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6992031	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6992434	0.92[EUR][1000 genomes]
rs6998258	1.00[CEU][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7005882	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7006209	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7010547	0.92[EUR][1000 genomes]
rs73236728	0.82[EUR][1000 genomes]
rs749328	0.87[EUR][1000 genomes]
rs7813194	0.87[EUR][1000 genomes]
rs7813201	0.87[EUR][1000 genomes]
rs7838582	0.92[EUR][1000 genomes]
rs7843436	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7845017	0.92[EUR][1000 genomes]
rs884325	1.00[CEU][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes]
rs959302	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:67044000-67057800	Weak transcription	Liver	Liver
3	chr8:67046600-67051200	Weak transcription	A549	lung
4	chr8:67047000-67052000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:67047200-67050400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:67047600-67055000	Genic enhancers	HSMMtube	muscle
7	chr8:67047800-67050400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:67048400-67050400	Genic enhancers	HSMM	muscle
9	chr8:67048600-67050800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:67048800-67053000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr8:67049000-67050600	Enhancers	NHDF-Ad	bronchial
12	chr8:67049000-67052000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:67049000-67052800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr8:67049200-67050400	Enhancers	NH-A	brain
15	chr8:67049200-67050400	Enhancers	NHLF	lung
16	chr8:67049200-67050400	Enhancers	Osteobl	bone
17	chr8:67049400-67050400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:67049400-67052000	Enhancers	Psoas Muscle	Psoas
19	chr8:67049400-67053800	Enhancers	Left Ventricle	heart
20	chr8:67049600-67051400	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:67049600-67051800	Enhancers	Fetal Heart	heart
22	chr8:67049800-67052800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:67049800-67055800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr8:67050000-67051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:67050000-67051400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:67050000-67051400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:67050000-67052600	Weak transcription	Right Ventricle	heart
28	chr8:67050200-67050400	Enhancers	Right Atrium	heart
29	chr8:67050200-67050400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr8:67050200-67051000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:67050200-67051200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:67050200-67058200	Weak transcription	Muscle Satellite Cultured Cells	--

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