Variant report

Variant	rs61738600
Chromosome Location	chr8:67062583-67062584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67054265..67056462-chr8:67061236..67063403,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10096789	0.95[EUR][1000 genomes]
rs13439818	0.90[EUR][1000 genomes]
rs34083382	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55640054	1.00[EUR][1000 genomes]
rs55691225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55745275	0.95[EUR][1000 genomes]
rs56163324	1.00[EUR][1000 genomes]
rs56176008	0.97[EUR][1000 genomes]
rs57390453	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472244	1.00[EUR][1000 genomes]
rs6982394	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6983227	1.00[EUR][1000 genomes]
rs6986947	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6990486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992031	1.00[EUR][1000 genomes]
rs6992434	1.00[EUR][1000 genomes]
rs6998258	0.92[EUR][1000 genomes]
rs7005882	1.00[EUR][1000 genomes]
rs7006209	1.00[EUR][1000 genomes]
rs7010547	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73236728	0.90[EUR][1000 genomes]
rs749328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7813194	0.95[EUR][1000 genomes]
rs7813201	0.95[EUR][1000 genomes]
rs7838582	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7839635	0.92[EUR][1000 genomes]
rs7843436	1.00[EUR][1000 genomes]
rs7845017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs884325	1.00[EUR][1000 genomes]
rs959302	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:67051800-67066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:67053400-67066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:67053800-67062800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:67053800-67066400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr8:67055600-67068800	Weak transcription	Right Atrium	heart
7	chr8:67055800-67064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:67055800-67068800	Weak transcription	Right Ventricle	heart
9	chr8:67058200-67064200	Weak transcription	Left Ventricle	heart
10	chr8:67058600-67071400	Weak transcription	Liver	Liver
11	chr8:67059200-67064000	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:67059200-67064200	Weak transcription	Psoas Muscle	Psoas
13	chr8:67059200-67066400	Weak transcription	NHLF	lung
14	chr8:67059400-67066000	Strong transcription	HSMM	muscle
15	chr8:67059400-67066000	Weak transcription	NHDF-Ad	bronchial
16	chr8:67059600-67065400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:67059600-67066600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:67059600-67066800	Weak transcription	Osteobl	bone
19	chr8:67059600-67067000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:67061200-67065800	Enhancers	Fetal Heart	heart
21	chr8:67061800-67066800	Strong transcription	HSMMtube	muscle
22	chr8:67062000-67064200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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