Variant report

Variant	rs7822243
Chromosome Location	chr8:67069388-67069389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67052382..67055131-chr8:67068247..67071130,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10081623	0.86[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10091625	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10092687	0.94[ASW][hapmap];0.80[MKK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs10093091	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095931	0.83[YRI][hapmap]
rs10099957	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10101457	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs10104916	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107870	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109602	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10448012	0.97[EUR][1000 genomes]
rs1044938	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1044942	0.97[EUR][1000 genomes]
rs10957367	0.87[EUR][1000 genomes]
rs11986216	0.87[CEU][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986805	0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs11988053	0.80[AFR][1000 genomes]
rs11990370	0.97[EUR][1000 genomes]
rs11997416	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12156080	0.97[EUR][1000 genomes]
rs12156157	0.97[EUR][1000 genomes]
rs12334408	0.83[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap]
rs16932514	0.82[AFR][1000 genomes]
rs16932527	1.00[EUR][1000 genomes]
rs16932535	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs16932564	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16932632	0.97[EUR][1000 genomes]
rs1814583	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28421720	1.00[EUR][1000 genomes]
rs28542552	1.00[EUR][1000 genomes]
rs28703095	0.97[EUR][1000 genomes]
rs3176921	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4279579	0.96[EUR][1000 genomes]
rs4366069	0.94[ASW][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs4495409	0.89[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap]
rs4503082	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030877	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56394731	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472244	0.83[GIH][hapmap]
rs6472251	0.94[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs6472252	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6472254	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472255	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472256	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472257	1.00[CEU][hapmap];0.83[TSI][hapmap];0.97[EUR][1000 genomes]
rs6982394	0.83[GIH][hapmap]
rs6986947	0.83[GIH][hapmap]
rs6988195	0.84[YRI][hapmap]
rs6990486	0.83[GIH][hapmap]
rs6990624	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996265	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6998258	0.83[GIH][hapmap]
rs6998761	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999780	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.97[EUR][1000 genomes]
rs7003017	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7003450	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7006209	0.83[GIH][hapmap]
rs7006903	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7008244	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs7008359	0.86[YRI][hapmap]
rs7008578	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs7013524	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7816410	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7818902	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7820617	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7823108	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7823304	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7826464	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7827407	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7828111	1.00[EUR][1000 genomes]
rs7830926	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7831234	0.87[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7834423	0.94[ASW][hapmap];0.85[GIH][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs7835948	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs7838125	1.00[EUR][1000 genomes]
rs7838500	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842707	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842761	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843038	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7843605	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845334	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs7846184	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs9694082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67058600-67071400	Weak transcription	Liver	Liver
2	chr8:67065400-67072200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:67065800-67069600	Genic enhancers	Fetal Heart	heart
4	chr8:67066000-67069600	Genic enhancers	HSMM	muscle
5	chr8:67067200-67071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:67067400-67069600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:67067400-67069800	Weak transcription	NH-A	brain
8	chr8:67067800-67069600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:67067800-67069600	Weak transcription	NHDF-Ad	bronchial
10	chr8:67067800-67069600	Weak transcription	Osteobl	bone
11	chr8:67067800-67069800	Weak transcription	NHLF	lung
12	chr8:67068000-67069800	Genic enhancers	HSMMtube	muscle
13	chr8:67068000-67070200	Enhancers	Psoas Muscle	Psoas
14	chr8:67068000-67072000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:67068200-67069600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:67068200-67069600	Enhancers	Left Ventricle	heart
17	chr8:67068600-67072600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr8:67068800-67069600	Enhancers	Right Ventricle	heart
19	chr8:67068800-67070400	Enhancers	Right Atrium	heart
20	chr8:67069000-67069400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr8:67069000-67069600	Enhancers	Fetal Muscle Trunk	muscle
22	chr8:67069200-67071000	Enhancers	Fetal Muscle Leg	muscle
23	chr8:67069200-67071400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:67069200-67076400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links