Variant report

Variant	rs7003450
Chromosome Location	chr8:67105436-67105437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM55-1	chr8:67105432-67105546	XLOC_006827

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10081623	0.94[EUR][1000 genomes]
rs10091625	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093091	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10099957	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10104916	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10107870	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10109602	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10448012	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1044938	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1044942	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10957367	0.84[EUR][1000 genomes]
rs11986216	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11990370	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11997416	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12156080	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12156157	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932527	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16932535	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16932564	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16932632	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1814583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421720	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28542552	0.97[EUR][1000 genomes]
rs28703095	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3176921	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4279579	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4503082	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5030877	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56394731	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472252	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472254	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472255	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472256	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6472257	0.94[EUR][1000 genomes]
rs6990624	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6996265	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6998761	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6999780	0.94[EUR][1000 genomes]
rs7003017	0.97[EUR][1000 genomes]
rs7006903	0.97[EUR][1000 genomes]
rs7008244	0.94[EUR][1000 genomes]
rs7013524	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7816410	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7818902	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7820617	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7822243	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7823108	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7826464	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7827407	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7828111	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7830926	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7831234	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7838125	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7838500	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7842707	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7842761	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7843038	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7843605	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7846184	0.94[EUR][1000 genomes]
rs9694082	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv972231	chr8:67104192-67114014	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67104200-67112000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:67104600-67105600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:67105400-67107600	Flanking Active TSS	Placenta	Placenta

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