Variant report

Variant	rs7003017
Chromosome Location	chr8:67017283-67017284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67015269..67017296-chr8:67024830..67026727,2	MCF-7	breast:
2	chr8:67016508..67023104-chr8:67024672..67027865,9	K562	blood:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10081623	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10091625	0.97[EUR][1000 genomes]
rs10093091	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs10099957	1.00[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10104916	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs10107870	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109602	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113208	0.93[YRI][hapmap]
rs10448012	0.97[EUR][1000 genomes]
rs1044938	0.97[EUR][1000 genomes]
rs1044942	0.97[EUR][1000 genomes]
rs10957367	0.87[EUR][1000 genomes]
rs11986216	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11990370	0.97[EUR][1000 genomes]
rs11997416	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs12156080	0.97[EUR][1000 genomes]
rs12156157	0.97[EUR][1000 genomes]
rs16932527	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932535	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932564	0.87[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932632	0.97[EUR][1000 genomes]
rs1814583	0.97[EUR][1000 genomes]
rs28421720	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28542552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28703095	0.97[EUR][1000 genomes]
rs3176921	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs4279579	0.96[EUR][1000 genomes]
rs4503082	1.00[EUR][1000 genomes]
rs5030877	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs56394731	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472252	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472254	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6472255	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6472256	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6472257	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs6990624	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6996265	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6998761	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs6999780	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs7003450	0.97[EUR][1000 genomes]
rs7006903	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7008244	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7013524	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs7816410	0.97[EUR][1000 genomes]
rs7818902	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7820617	0.87[CEU][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822243	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7823108	0.97[EUR][1000 genomes]
rs7823304	0.97[EUR][1000 genomes]
rs7826464	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7827407	1.00[EUR][1000 genomes]
rs7828111	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7830926	1.00[EUR][1000 genomes]
rs7831234	1.00[CEU][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838125	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838500	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7842707	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7842761	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7843038	0.87[CEU][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843605	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs7846184	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9694082	0.87[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67014400-67017400	Weak transcription	K562	blood
2	chr8:67017200-67017600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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