Variant report

Variant	rs7830926
Chromosome Location	chr8:67052111-67052112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67025222..67027125-chr8:67051798..67053628,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10081623	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10091625	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10092687	0.92[AFR][1000 genomes]
rs10093091	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095931	0.88[AFR][1000 genomes]
rs10099957	1.00[EUR][1000 genomes]
rs10101457	0.91[AFR][1000 genomes]
rs10104916	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107870	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109602	1.00[EUR][1000 genomes]
rs10448012	0.97[EUR][1000 genomes]
rs1044938	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1044942	0.97[EUR][1000 genomes]
rs10957367	0.87[EUR][1000 genomes]
rs11986216	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11986805	0.91[AFR][1000 genomes]
rs11988053	0.90[AFR][1000 genomes]
rs11990370	0.97[EUR][1000 genomes]
rs11997416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12156080	0.97[EUR][1000 genomes]
rs12156157	0.97[EUR][1000 genomes]
rs12334408	0.88[AFR][1000 genomes]
rs16932514	0.91[AFR][1000 genomes]
rs16932527	1.00[EUR][1000 genomes]
rs16932535	1.00[EUR][1000 genomes]
rs16932564	1.00[EUR][1000 genomes]
rs16932632	0.97[EUR][1000 genomes]
rs1814583	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28421720	1.00[EUR][1000 genomes]
rs28542552	1.00[EUR][1000 genomes]
rs28703095	0.97[EUR][1000 genomes]
rs3176921	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4279579	0.96[EUR][1000 genomes]
rs4366069	0.92[AFR][1000 genomes]
rs4495409	0.88[AFR][1000 genomes]
rs4503082	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5030877	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56394731	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472249	0.88[AFR][1000 genomes]
rs6472251	0.91[AFR][1000 genomes]
rs6472252	1.00[EUR][1000 genomes]
rs6472254	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472255	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6472257	0.97[EUR][1000 genomes]
rs6988195	0.86[AFR][1000 genomes]
rs6990624	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6998761	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999780	0.97[EUR][1000 genomes]
rs7003017	1.00[EUR][1000 genomes]
rs7003450	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7006903	1.00[EUR][1000 genomes]
rs7008244	0.97[EUR][1000 genomes]
rs7008359	0.87[AFR][1000 genomes]
rs7008578	0.91[AFR][1000 genomes]
rs7013524	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73246516	0.87[AFR][1000 genomes]
rs7816410	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7818902	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7820617	1.00[EUR][1000 genomes]
rs7822243	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823108	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7823304	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7826464	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7827407	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7828111	1.00[EUR][1000 genomes]
rs7831234	1.00[EUR][1000 genomes]
rs7834423	0.91[AFR][1000 genomes]
rs7835948	0.87[AFR][1000 genomes]
rs7838125	1.00[EUR][1000 genomes]
rs7838500	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842707	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7842761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7843038	1.00[EUR][1000 genomes]
rs7843605	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845334	0.91[AFR][1000 genomes]
rs7846184	0.97[EUR][1000 genomes]
rs9694082	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:67044000-67057800	Weak transcription	Liver	Liver
3	chr8:67047600-67055000	Genic enhancers	HSMMtube	muscle
4	chr8:67048800-67053000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:67049000-67052800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:67049400-67053800	Enhancers	Left Ventricle	heart
7	chr8:67049800-67052800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:67049800-67055800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr8:67050000-67052600	Weak transcription	Right Ventricle	heart
10	chr8:67050200-67058200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:67050400-67053800	Weak transcription	Right Atrium	heart
12	chr8:67051000-67052800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:67051800-67054200	Weak transcription	K562	blood
14	chr8:67051800-67058000	Strong transcription	HSMM	muscle
15	chr8:67051800-67059600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr8:67051800-67066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:67052000-67052400	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:67052000-67052600	Genic enhancers	Fetal Heart	heart
19	chr8:67052000-67052800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:67052000-67052800	Weak transcription	Psoas Muscle	Psoas

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