Variant report

Variant	rs10091688
Chromosome Location	chr8:66976328-66976329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66975090..66978056-chr8:67341293..67343047,2	MCF-7	breast:
2	chr8:66971479..66974707-chr8:66974890..66977947,4	K562	blood:
3	chr8:66974900..66977338-chr8:67024571..67027065,2	MCF-7	breast:
4	chr8:66967974..66973284-chr8:66974182..66976883,4	K562	blood:

Variant related genes	Relation type
ENSG00000253190	Chromatin interaction
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10090752	1.00[EUR][1000 genomes]
rs10093753	1.00[EUR][1000 genomes]
rs10095531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10099780	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107052	1.00[EUR][1000 genomes]
rs10108405	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113256	1.00[EUR][1000 genomes]
rs13439700	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932461	0.83[AFR][1000 genomes]
rs16932465	0.83[AFR][1000 genomes]
rs16932468	0.83[AFR][1000 genomes]
rs28364014	1.00[EUR][1000 genomes]
rs28482448	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28491110	0.83[AFR][1000 genomes]
rs28577932	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28623751	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28690794	1.00[EUR][1000 genomes]
rs28702525	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28705810	1.00[EUR][1000 genomes]
rs28770228	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28855126	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28871963	1.00[EUR][1000 genomes]
rs28873428	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57754344	1.00[EUR][1000 genomes]
rs7003229	1.00[EUR][1000 genomes]
rs73244947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66971200-66976600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:66973600-66977600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:66974400-66977600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:66975000-66977600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr8:66975200-66977800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:66975400-66976400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:66975400-66976400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr8:66975600-66977600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:66975600-66977800	Enhancers	NHDF-Ad	bronchial
10	chr8:66975800-66977200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:66975800-66977200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr8:66975800-66977600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:66975800-66977600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:66975800-66977600	Enhancers	Osteobl	bone
15	chr8:66975800-66977800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:66975800-66977800	Enhancers	Dnd41	blood
17	chr8:66975800-66977800	Enhancers	HMEC	breast
18	chr8:66975800-66977800	Enhancers	NHLF	lung
19	chr8:66976000-66977800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr8:66976200-66976400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr8:66976200-66976800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr8:66976200-66977200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr8:66976200-66977200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:66976200-66977200	Enhancers	Adipose Nuclei	Adipose
25	chr8:66976200-66977600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr8:66976200-66977600	Enhancers	Brain Cingulate Gyrus	brain
27	chr8:66976200-66977600	Enhancers	Brain Hippocampus Middle	brain
28	chr8:66976200-66977600	Enhancers	NHEK	skin
29	chr8:66976200-66977800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr8:66976200-66977800	Enhancers	Colon Smooth Muscle	Colon
31	chr8:66976200-66977800	Enhancers	A549	lung
32	chr8:66976200-66978000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr8:66976200-66978000	Enhancers	HSMM	muscle
34	chr8:66976200-66978000	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links