Variant report

Variant	rs10113256
Chromosome Location	chr8:67080169-67080170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67079708..67082330-chr8:67318402..67319910,2	MCF-7	breast:
2	chr8:67078813..67081447-chr8:67083472..67085434,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10090752	1.00[EUR][1000 genomes]
rs10091688	1.00[EUR][1000 genomes]
rs10093753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095531	1.00[EUR][1000 genomes]
rs10096043	1.00[EUR][1000 genomes]
rs10099780	1.00[EUR][1000 genomes]
rs10106062	1.00[EUR][1000 genomes]
rs10107052	1.00[EUR][1000 genomes]
rs10108405	1.00[EUR][1000 genomes]
rs10110227	1.00[EUR][1000 genomes]
rs13439700	1.00[EUR][1000 genomes]
rs28364014	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28482448	1.00[EUR][1000 genomes]
rs28577932	1.00[EUR][1000 genomes]
rs28623751	1.00[EUR][1000 genomes]
rs28690794	1.00[EUR][1000 genomes]
rs28702525	1.00[EUR][1000 genomes]
rs28705810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28770228	1.00[EUR][1000 genomes]
rs28855126	1.00[EUR][1000 genomes]
rs28871963	1.00[EUR][1000 genomes]
rs28873428	1.00[EUR][1000 genomes]
rs57754344	1.00[EUR][1000 genomes]
rs7003229	1.00[EUR][1000 genomes]
rs73244947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67070200-67080200	Weak transcription	Psoas Muscle	Psoas
2	chr8:67074200-67083000	Strong transcription	HSMM	muscle
3	chr8:67076600-67086600	Weak transcription	Liver	Liver
4	chr8:67077000-67080200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:67077800-67080800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:67078600-67081000	Genic enhancers	HSMMtube	muscle
7	chr8:67078800-67081600	Enhancers	Fetal Muscle Leg	muscle
8	chr8:67078800-67081800	Genic enhancers	Fetal Heart	heart
9	chr8:67079000-67080200	Weak transcription	NHLF	lung
10	chr8:67079000-67080200	Weak transcription	Osteobl	bone
11	chr8:67079000-67088600	Weak transcription	NH-A	brain
12	chr8:67079200-67080400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:67079400-67080200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:67079400-67080600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:67079400-67080600	Weak transcription	Right Ventricle	heart
16	chr8:67079400-67085800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:67079600-67083000	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr8:67079800-67080400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr8:67079800-67080800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr8:67080000-67080200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:67080000-67080600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:67080000-67080800	Enhancers	Right Atrium	heart
23	chr8:67080000-67081000	Enhancers	Placenta	Placenta
24	chr8:67080000-67081000	Enhancers	Left Ventricle	heart

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