Variant report

Variant	rs10099780
Chromosome Location	chr8:66971235-66971236
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66967974..66973284-chr8:66974182..66976883,4	K562	blood:
2	chr8:66959527..66962365-chr8:66969544..66971577,2	K562	blood:
3	chr8:66970245..66971812-chr8:67339610..67342564,2	K562	blood:
4	chr8:66969033..66972090-chr8:67340125..67343185,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179041	Chromatin interaction
ENSG00000147576	Chromatin interaction
ENSG00000246145	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10090752	1.00[EUR][1000 genomes]
rs10091688	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093753	1.00[EUR][1000 genomes]
rs10095531	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096043	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106062	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107052	1.00[EUR][1000 genomes]
rs10108405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110227	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113256	1.00[EUR][1000 genomes]
rs13439700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28364014	1.00[EUR][1000 genomes]
rs28482448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28577932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28623751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28690794	1.00[EUR][1000 genomes]
rs28702525	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28705810	1.00[EUR][1000 genomes]
rs28770228	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28855126	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28871963	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28873428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57754344	1.00[EUR][1000 genomes]
rs7003229	1.00[EUR][1000 genomes]
rs73244947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66969600-66971400	Enhancers	Primary T cells from cord blood	blood
2	chr8:66969600-66971400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr8:66969600-66971400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr8:66969800-66971400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:66969800-66971600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:66970600-66971400	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:66970600-66975400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr8:66970800-66975200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:66971000-66975800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:66971200-66972800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:66971200-66976600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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