Variant report

Variant	rs28364014
Chromosome Location	chr8:67090330-67090331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67088502..67091443-chr8:67341463..67343865,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10090752	1.00[EUR][1000 genomes]
rs10091688	1.00[EUR][1000 genomes]
rs10093753	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095531	1.00[EUR][1000 genomes]
rs10096043	1.00[EUR][1000 genomes]
rs10099780	1.00[EUR][1000 genomes]
rs10106062	1.00[EUR][1000 genomes]
rs10107052	1.00[EUR][1000 genomes]
rs10108405	1.00[EUR][1000 genomes]
rs10110227	1.00[EUR][1000 genomes]
rs10113256	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439700	1.00[EUR][1000 genomes]
rs28482448	1.00[EUR][1000 genomes]
rs28577932	1.00[EUR][1000 genomes]
rs28623751	1.00[EUR][1000 genomes]
rs28690794	1.00[EUR][1000 genomes]
rs28702525	1.00[EUR][1000 genomes]
rs28705810	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28770228	1.00[EUR][1000 genomes]
rs28855126	1.00[EUR][1000 genomes]
rs28871963	1.00[EUR][1000 genomes]
rs28873428	1.00[EUR][1000 genomes]
rs57754344	1.00[EUR][1000 genomes]
rs7003229	1.00[EUR][1000 genomes]
rs73244947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67088800-67090400	Bivalent Enhancer	Fetal Thymus	thymus
2	chr8:67088800-67090600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
3	chr8:67089600-67090600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
4	chr8:67089800-67090400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr8:67089800-67090400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:67089800-67090400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
7	chr8:67089800-67090400	Bivalent Enhancer	Fetal Intestine Large	intestine
8	chr8:67089800-67090400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
9	chr8:67089800-67090400	Enhancers	Left Ventricle	heart
10	chr8:67089800-67090400	Enhancers	Right Atrium	heart
11	chr8:67089800-67090400	Bivalent Enhancer	Spleen	Spleen
12	chr8:67089800-67090600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr8:67089800-67090600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
14	chr8:67089800-67090600	Bivalent Enhancer	Esophagus	oesophagus
15	chr8:67089800-67090600	Enhancers	Lung	lung
16	chr8:67089800-67090600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
17	chr8:67089800-67090800	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr8:67090000-67090400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
19	chr8:67090000-67090400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
20	chr8:67090000-67090400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:67090000-67090400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:67090000-67090400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:67090000-67090400	Bivalent Enhancer	Brain Substantia Nigra	brain
24	chr8:67090000-67090400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr8:67090000-67090400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
26	chr8:67090000-67090400	Flanking Bivalent TSS/Enh	NH-A	brain
27	chr8:67090000-67090600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr8:67090000-67090600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr8:67090000-67090600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr8:67090000-67090600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:67090000-67090600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:67090000-67090600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:67090000-67090600	Bivalent/Poised TSS	Brain Anterior Caudate	brain
34	chr8:67090000-67090600	Enhancers	Gastric	stomach
35	chr8:67090000-67090600	Enhancers	Pancreas	Pancrea
36	chr8:67090000-67090800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr8:67090000-67090800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr8:67090000-67090800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
39	chr8:67090000-67090800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr8:67090000-67091000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr8:67090200-67090400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr8:67090200-67090400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr8:67090200-67090400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr8:67090200-67090400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr8:67090200-67090400	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
46	chr8:67090200-67090400	Enhancers	Fetal Heart	heart
47	chr8:67090200-67090400	Bivalent Enhancer	Fetal Lung	lung
48	chr8:67090200-67090400	Bivalent Enhancer	Right Ventricle	heart
49	chr8:67090200-67090400	Enhancers	HSMMtube	muscle
50	chr8:67090200-67090400	Flanking Bivalent TSS/Enh	NHLF	lung

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