Variant report
| Variant | rs73244947 |
|---|---|
| Chromosome Location | chr8:67008724-67008725 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:67007328..67009042-chr8:67011505..67014334,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10090752 | 1.00[EUR][1000 genomes] |
| rs10091688 | 1.00[EUR][1000 genomes] |
| rs10093753 | 1.00[EUR][1000 genomes] |
| rs10095531 | 1.00[EUR][1000 genomes] |
| rs10096043 | 1.00[EUR][1000 genomes] |
| rs10099780 | 1.00[EUR][1000 genomes] |
| rs10106062 | 1.00[EUR][1000 genomes] |
| rs10107052 | 1.00[EUR][1000 genomes] |
| rs10108405 | 1.00[EUR][1000 genomes] |
| rs10110227 | 1.00[EUR][1000 genomes] |
| rs10113256 | 1.00[EUR][1000 genomes] |
| rs13439700 | 1.00[EUR][1000 genomes] |
| rs28364014 | 1.00[EUR][1000 genomes] |
| rs28482448 | 1.00[EUR][1000 genomes] |
| rs28577932 | 1.00[EUR][1000 genomes] |
| rs28623751 | 1.00[EUR][1000 genomes] |
| rs28690794 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28702525 | 1.00[EUR][1000 genomes] |
| rs28705810 | 1.00[EUR][1000 genomes] |
| rs28770228 | 1.00[EUR][1000 genomes] |
| rs28855126 | 1.00[EUR][1000 genomes] |
| rs28871963 | 1.00[EUR][1000 genomes] |
| rs28873428 | 1.00[EUR][1000 genomes] |
| rs57754344 | 1.00[EUR][1000 genomes] |
| rs7003229 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | esv3414665 | chr8:66936816-67381935 | Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:67004800-67015600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
