Variant report

Variant	rs2358386
Chromosome Location	chr1:212131579-212131580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10779568	0.84[EUR][1000 genomes]
rs10863939	0.84[EUR][1000 genomes]
rs1316820	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1578992	0.96[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1578993	0.94[ASW][hapmap];0.92[CEU][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1806360	0.84[EUR][1000 genomes]
rs1933593	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2014029	0.86[JPT][hapmap]
rs2105162	0.84[ASN][1000 genomes]
rs2248191	0.86[JPT][hapmap]
rs2251398	0.84[EUR][1000 genomes]
rs2358440	0.90[JPT][hapmap];0.90[YRI][hapmap]
rs2788133	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2788139	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs2788140	0.94[ASW][hapmap];0.96[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2808385	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2808392	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884428	0.88[CHD][hapmap];0.95[JPT][hapmap]
rs2884457	0.80[EUR][1000 genomes]
rs2970599	0.94[ASW][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.90[YRI][hapmap]
rs2970601	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2993528	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2993531	0.94[ASW][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap]
rs2993533	0.94[ASW][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.90[YRI][hapmap]
rs2993534	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2993541	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2993544	0.95[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3009985	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3010003	0.94[ASW][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs3010004	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs3010006	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs3010023	0.90[JPT][hapmap];0.89[YRI][hapmap]
rs3738449	1.00[ASW][hapmap];0.96[CEU][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs4951435	0.80[ASN][1000 genomes]
rs59706922	0.86[ASN][1000 genomes]
rs6657728	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs6684814	0.86[ASN][1000 genomes]
rs7522330	0.84[EUR][1000 genomes]
rs7550754	0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2358386	INTS7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212103000-212132600	Weak transcription	Gastric	stomach
2	chr1:212103600-212132200	Weak transcription	Esophagus	oesophagus
3	chr1:212103800-212132200	Weak transcription	NHLF	lung
4	chr1:212106200-212148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:212106400-212132400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:212106400-212132600	Weak transcription	Right Ventricle	heart
7	chr1:212106400-212147800	Weak transcription	NH-A	brain
8	chr1:212107000-212132800	Weak transcription	Pancreas	Pancrea
9	chr1:212108000-212132400	Weak transcription	Spleen	Spleen
10	chr1:212109200-212132800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:212112000-212132200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:212112000-212170200	Weak transcription	Small Intestine	intestine
13	chr1:212112400-212132200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:212112400-212132800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:212112400-212133000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:212112400-212148600	Weak transcription	NHDF-Ad	bronchial
17	chr1:212112600-212132200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:212112600-212133600	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:212112600-212148200	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:212112800-212202000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr1:212113600-212138600	Weak transcription	Fetal Kidney	kidney
22	chr1:212113600-212151600	Weak transcription	Psoas Muscle	Psoas
23	chr1:212113600-212170200	Weak transcription	Fetal Brain Male	brain
24	chr1:212114200-212185800	Weak transcription	Brain Angular Gyrus	brain
25	chr1:212115400-212138800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:212115800-212132200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:212115800-212132400	Weak transcription	Brain Substantia Nigra	brain
28	chr1:212115800-212132600	Weak transcription	Placenta	Placenta
29	chr1:212115800-212144000	Weak transcription	Adipose Nuclei	Adipose
30	chr1:212115800-212151600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:212117000-212139600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:212117800-212132600	Weak transcription	Left Ventricle	heart
33	chr1:212118400-212139000	Weak transcription	Osteobl	bone
34	chr1:212118600-212132200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:212118600-212132400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:212118600-212132600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr1:212118600-212141800	Weak transcription	HSMM	muscle
38	chr1:212118600-212149000	Weak transcription	Fetal Heart	heart
39	chr1:212119000-212132600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr1:212119000-212133000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr1:212121600-212132400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:212121800-212138000	Weak transcription	HSMMtube	muscle
43	chr1:212122000-212132200	Weak transcription	HepG2	liver
44	chr1:212122200-212131800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:212123200-212132600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:212123200-212133000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr1:212123400-212131800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr1:212123400-212131800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr1:212123400-212152600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr1:212123600-212132000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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