Variant report

Variant	rs2359425
Chromosome Location	chr5:76158036-76158037
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11948063	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11956840	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4481337	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59427846	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61597150	1.00[EUR][1000 genomes]
rs6453255	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6897460	1.00[GIH][hapmap]
rs73130987	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7724915	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76153000-76174400	Weak transcription	Primary T cells from cord blood	blood
2	chr5:76154800-76162800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:76155200-76158600	Weak transcription	Stomach Mucosa	stomach
4	chr5:76156000-76158800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:76156400-76158400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:76156400-76158600	Weak transcription	Fetal Intestine Small	intestine
7	chr5:76156600-76158800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:76156600-76159200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr5:76156800-76162200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:76157200-76158600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:76157200-76162800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:76157400-76159000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:76157400-76159200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr5:76157800-76158200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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