Variant report

Variant	rs6897460
Chromosome Location	chr5:76147593-76147594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:76113078..76116046-chr5:76145704..76148210,2	K562	blood:
2	chr5:76144979..76147946-chr5:76325039..76327688,2	K562	blood:

Variant related genes	Relation type
ENSG00000164251	Chromatin interaction
ENSG00000164252	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11956840	1.00[GIH][hapmap]
rs2359425	1.00[GIH][hapmap]
rs57680676	0.91[EUR][1000 genomes]
rs57847853	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6882703	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6883033	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7712675	1.00[JPT][hapmap]
rs7712957	1.00[JPT][hapmap]
rs7724915	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3393424	chr5:76122720-76287744	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2762526	chr5:76134777-76153934	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv34133	chr5:76138696-76239330	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76144400-76150600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:76144800-76148200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:76145000-76148000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr5:76145000-76148200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:76145000-76148400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:76145000-76148800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:76145000-76149000	Enhancers	Duodenum Mucosa	Duodenum
8	chr5:76145200-76147600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr5:76145200-76147600	Enhancers	Fetal Intestine Small	intestine
10	chr5:76145200-76148000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr5:76145200-76148000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:76145200-76148400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr5:76145200-76148600	Enhancers	Primary B cells from peripheral blood	blood
14	chr5:76145200-76149000	Enhancers	Fetal Intestine Large	intestine
15	chr5:76145200-76149200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr5:76145200-76153400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr5:76145600-76148800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:76145800-76147600	Enhancers	Right Atrium	heart
19	chr5:76145800-76147800	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr5:76145800-76148800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:76145800-76149000	Enhancers	Adipose Nuclei	Adipose
22	chr5:76146000-76150600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:76146400-76149000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:76146400-76149800	Weak transcription	Stomach Mucosa	stomach
25	chr5:76146600-76147800	Enhancers	K562	blood
26	chr5:76146600-76148000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr5:76146600-76148200	Enhancers	Fetal Thymus	thymus
28	chr5:76146600-76148400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr5:76146600-76150600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:76146600-76150600	Weak transcription	Gastric	stomach
31	chr5:76146600-76152000	Weak transcription	Thymus	Thymus
32	chr5:76147000-76147600	Enhancers	Fetal Muscle Leg	muscle
33	chr5:76147000-76148400	Enhancers	Left Ventricle	heart
34	chr5:76147000-76150600	Weak transcription	Spleen	Spleen
35	chr5:76147000-76151000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:76147200-76147600	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr5:76147400-76147600	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr5:76147400-76147800	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr5:76147400-76149000	Enhancers	Primary T cells from cord blood	blood
40	chr5:76147400-76150000	Weak transcription	Small Intestine	intestine
41	chr5:76147400-76150600	Weak transcription	Placenta	Placenta
42	chr5:76147400-76150800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr5:76147400-76150800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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