Variant report

Variant	rs2363670
Chromosome Location	chr3:60611613-60611614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10510852	0.91[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap]
rs11716931	0.88[JPT][hapmap];0.84[AFR][1000 genomes]
rs11717799	0.88[JPT][hapmap]
rs11721114	0.84[AFR][1000 genomes]
rs12487927	0.88[JPT][hapmap];0.84[AFR][1000 genomes]
rs13060659	0.81[CEU][hapmap]
rs6762641	0.91[CHD][hapmap];0.88[JPT][hapmap];0.81[LWK][hapmap];0.81[MEX][hapmap]
rs762693	0.88[JPT][hapmap]
rs7638130	0.85[ASW][hapmap]
rs967318	0.91[CHD][hapmap];0.88[JPT][hapmap];0.87[LWK][hapmap];0.81[MEX][hapmap];0.86[AFR][1000 genomes]
rs967319	0.85[CHD][hapmap];0.88[JPT][hapmap];0.87[LWK][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2363670	DNAH12	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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