Variant report

Variant	rs2364399
Chromosome Location	chr7:140435077-140435078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140423472..140425930-chr7:140432737..140435210,2	K562	blood:
2	chr7:140434733..140440913-chr7:140443989..140447709,5	K562	blood:

Extended variants
information (count: 116 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10232557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10234502	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10235900	0.80[ASN][1000 genomes]
rs10240283	0.82[EUR][1000 genomes]
rs10240403	0.82[EUR][1000 genomes]
rs10244133	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10251380	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10251793	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10255130	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10255711	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10261732	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10263448	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap]
rs10272940	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10281173	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10281508	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10282499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1042179	0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1140034	0.80[MKK][hapmap]
rs11768253	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11769042	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11981790	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1267602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1267608	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1267610	0.83[ASN][1000 genomes]
rs1267612	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267616	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1267621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267622	0.94[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1267623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267624	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267625	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267632	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1267634	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1267635	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1267637	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1267643	1.00[CEU][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1267645	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1267646	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1267647	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1267648	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1267673	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap]
rs1272419	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17161762	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17161763	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2109307	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2109742	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2109743	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2364396	0.83[MEX][hapmap]
rs2364397	0.90[LWK][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2535946	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2535948	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs269238	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2706774	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2706775	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2907949	0.83[AFR][1000 genomes]
rs2930315	0.81[YRI][hapmap]
rs2930328	0.81[MKK][hapmap]
rs2930329	0.81[MKK][hapmap]
rs2968549	0.82[AFR][1000 genomes]
rs2968550	0.90[LWK][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2968553	0.84[LWK][hapmap];0.85[MKK][hapmap];0.92[YRI][hapmap]
rs2968559	0.80[MKK][hapmap]
rs3789806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4140846	0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4726020	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs56797136	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57248447	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59055264	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62484301	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6464037	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6464937	0.80[MKK][hapmap]
rs6944385	0.94[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs6947950	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6948703	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6950312	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6950946	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6951776	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6952601	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6953658	0.96[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6954652	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6957490	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6961127	0.94[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs6962239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs6964724	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6964937	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6965532	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6965559	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6966197	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6970893	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6977834	0.84[AFR][1000 genomes]
rs7357151	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs765373	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap]
rs7776491	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7785306	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap]
rs7791391	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7791924	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7792984	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7793758	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7796827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7798031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7798324	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7800472	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7801086	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7803697	0.91[LWK][hapmap];0.85[MKK][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs7803738	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648715	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs9648716	0.94[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.82[EUR][1000 genomes]
rs964942	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.92[YRI][hapmap]
rs986050	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv869260	chr7:140404835-140542905	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1015269	chr7:140412464-140458821	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2364399	ADCK2	cis	cerebellum	SCAN
rs2364399	NDUFB2	cis	lymphoblastoid	seeQTL
rs2364399	BRAF	Cis_1M	lymphoblastoid	RTeQTL
rs2364399	OR6B1	cis	parietal	SCAN
rs2364399	ADCK2	cis	parietal	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140398000-140466600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:140398200-140473800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:140398200-140492600	Weak transcription	Colonic Mucosa	Colon
4	chr7:140398600-140459400	Weak transcription	Brain Germinal Matrix	brain
5	chr7:140398600-140491800	Weak transcription	Fetal Brain Male	brain
6	chr7:140399400-140468200	Weak transcription	Right Ventricle	heart
7	chr7:140399600-140443800	Weak transcription	Fetal Heart	heart
8	chr7:140400000-140474000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:140404400-140452400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:140404800-140489000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:140404800-140517000	Weak transcription	Psoas Muscle	Psoas
12	chr7:140405200-140470800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:140405600-140472200	Weak transcription	Brain Substantia Nigra	brain
14	chr7:140406600-140472800	Weak transcription	Hela-S3	cervix
15	chr7:140407000-140454200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:140407000-140466800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:140407200-140437600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:140407200-140438000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:140407200-140438200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:140407200-140438200	Weak transcription	Ovary	ovary
21	chr7:140407200-140438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr7:140407200-140438200	Weak transcription	HepG2	liver
23	chr7:140407200-140438600	Weak transcription	Left Ventricle	heart
24	chr7:140407200-140438800	Weak transcription	Brain Anterior Caudate	brain
25	chr7:140407200-140445400	Weak transcription	Spleen	Spleen
26	chr7:140407200-140449800	Weak transcription	A549	lung
27	chr7:140407200-140450000	Weak transcription	Pancreas	Pancrea
28	chr7:140407200-140454400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:140407200-140459200	Weak transcription	Fetal Lung	lung
30	chr7:140407200-140468400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:140415000-140437800	Weak transcription	Fetal Brain Female	brain
32	chr7:140415000-140454200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:140415000-140504400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:140415200-140436600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr7:140415200-140437600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr7:140415200-140438400	Weak transcription	Thymus	Thymus
37	chr7:140415200-140466400	Weak transcription	Aorta	Aorta
38	chr7:140415200-140472000	Weak transcription	Lung	lung
39	chr7:140415200-140506600	Weak transcription	Gastric	stomach
40	chr7:140415600-140437000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr7:140415800-140436600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:140420000-140443600	Weak transcription	GM12878-XiMat	blood
43	chr7:140420400-140437200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:140420800-140437600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:140421800-140474000	Weak transcription	Brain Angular Gyrus	brain
46	chr7:140422400-140439400	Weak transcription	Fetal Kidney	kidney
47	chr7:140422600-140437800	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr7:140423000-140437600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr7:140423000-140438200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr7:140423800-140453000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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