Variant report

Variant	rs269238
Chromosome Location	chr7:140356141-140356142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140352705..140358390-chr7:140370477..140374283,7	MCF-7	breast:
2	chr7:140178651..140180192-chr7:140355165..140357429,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146966	Chromatin interaction
ENSG00000133606	Chromatin interaction
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10232557	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs10234502	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10282499	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267602	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267603	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267612	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1267615	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267616	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1267622	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1267623	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267624	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267625	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267632	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1267634	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1267635	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1267637	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267646	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1267647	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1267648	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1267673	0.92[ASW][hapmap];0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs2109742	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2109743	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2364399	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs2535946	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2706774	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2706775	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs3789806	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs4140846	1.00[CHB][hapmap]
rs6464037	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs6947950	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs6964724	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7801086	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs7803738	0.87[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3371832	chr7:140352483-140356781	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140351800-140356200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:140351800-140358000	Weak transcription	Gastric	stomach
3	chr7:140353400-140356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:140353400-140356200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:140353400-140356200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr7:140353400-140356200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr7:140353400-140356200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:140353400-140356200	Weak transcription	Fetal Kidney	kidney
9	chr7:140353400-140356400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:140353400-140356600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:140353400-140356600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr7:140353400-140356600	Weak transcription	Lung	lung
13	chr7:140353400-140356600	Weak transcription	Psoas Muscle	Psoas
14	chr7:140353600-140356200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:140353600-140356200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:140353600-140356400	Weak transcription	Brain Anterior Caudate	brain
17	chr7:140353600-140356600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:140354400-140356200	Weak transcription	Liver	Liver
19	chr7:140355400-140356200	Enhancers	Adipose Nuclei	Adipose
20	chr7:140355400-140357400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:140355400-140358400	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr7:140355600-140356200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr7:140355600-140356200	Enhancers	Duodenum Mucosa	Duodenum
24	chr7:140355600-140356200	Enhancers	GM12878-XiMat	blood
25	chr7:140355600-140356400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr7:140355600-140357400	Enhancers	Placenta	Placenta
27	chr7:140355600-140357400	Enhancers	Stomach Mucosa	stomach
28	chr7:140355600-140357600	Enhancers	Fetal Muscle Leg	muscle
29	chr7:140355800-140356200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:140355800-140356200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:140355800-140356200	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr7:140355800-140356200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:140355800-140356200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:140355800-140356200	Enhancers	Brain Hippocampus Middle	brain
35	chr7:140355800-140356200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr7:140355800-140356200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr7:140355800-140356200	Enhancers	HUVEC	blood vessel
38	chr7:140355800-140356200	Enhancers	NHLF	lung
39	chr7:140355800-140356200	Enhancers	Osteobl	bone
40	chr7:140355800-140356400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr7:140355800-140356400	Enhancers	Right Atrium	heart
42	chr7:140355800-140356400	Enhancers	Dnd41	blood
43	chr7:140355800-140357000	Enhancers	Spleen	Spleen
44	chr7:140355800-140357000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr7:140355800-140357200	Enhancers	Primary hematopoietic stem cells	blood
46	chr7:140355800-140357200	Enhancers	Esophagus	oesophagus
47	chr7:140355800-140357200	Enhancers	Fetal Muscle Trunk	muscle
48	chr7:140355800-140357200	Enhancers	Left Ventricle	heart
49	chr7:140355800-140357400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr7:140356000-140356200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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